Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20itinerans_20[genbank_20GCA_5F001649415.1_202016-05-21] 28,415 sequences; 455,349,267 total letters Query= AAMG01002183.1 Length=408 Score E Sequences producing significant alignments: (Bits) Value seq110 277 4e-72 seq838 273 5e-71 seq692 208 2e-51 seq598 190 5e-46 seq502 86.0 2e-14 >seq110 Length=548158 Score = 277 bits (306), Expect = 4e-72 Identities = 306/405 (76%), Gaps = 2/405 (0%) Strand=Plus/Plus Query 5 TGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGC 64 |||||| |||| ||||||||| ||||||||||||||||||| || ||| || ||| Sbjct 540393 TGAGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAAGACAGAGGATGCAAGC 540452 Query 65 GTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAA 124 |||||||||||| | ||||||||||| || |||||||| || | ||||| | || ||| Sbjct 540453 GTTATCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTCAAGTCCGCCGTCAAA 540512 Query 125 GGCTATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCA 184 | | |||||||||| || || | |||||| | ||| |||| | | ||||||| Sbjct 540513 TCCCAGGGCTCAACCCTGGACAGGCGGTGGAAACTACCAAGCTGGAGTACGGTAGGGGCA 540572 Query 185 AGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAA 244 |||||| | ||| |||||||||||||||||| || | | |||||||| |||||| Sbjct 540573 GAGGGAATTTCCGGTGGAGCGGTGAAATGCGTAGAGATCGGAAAGAACACCAACGGCGAA 540632 Query 245 GGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATT 304 || |||||| | | |||||||||||| ||||||| |||||||||| ||||| Sbjct 540633 AGCACTCTGCTGGGCCGACACTGACACTGAGAGACGAAAGCTAGGGGAGCAAATGGGATT 540692 Query 305 AGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCAT-AAGTG 363 |||||||| ||||||| ||||||||||||| |||||||| | | | ||| || | Sbjct 540693 AGATACCCCAGTAGTCCTAGCCGTAAACGATGGATACTAGGCG-CTGTGCGTATCGACCC 540751 Query 364 CTCCGGTGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 | | |||| | ||| ||||| ||||||| || ||||||||||| Sbjct 540752 GTGCAGTGCTGTAGCTAACGCGTTAAGTATCCCGCCTGGGGAGTA 540796 >seq838 Length=133837 Score = 273 bits (302), Expect = 5e-71 Identities = 305/405 (75%), Gaps = 2/405 (0%) Strand=Plus/Minus Query 5 TGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGC 64 |||||| |||| ||||||||| ||||||||||||||||||| || ||| || ||| Sbjct 52187 TGAGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAAGACAGAGGATGCAAGC 52128 Query 65 GTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAA 124 |||||||||||| | ||||||||||| || |||||||| || | ||||| | || ||| Sbjct 52127 GTTATCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTCAAGTCCGCCGTCAAA 52068 Query 125 GGCTATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCA 184 | | |||||||||| || || | |||||| | ||| |||| | | ||||||| Sbjct 52067 TCCCAGGGCTCAACCCTGGACAGGCGGTGGAAACTACCAAGCTGGAGTACGGTAGGGGCA 52008 Query 185 AGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAA 244 |||||| | ||| |||||||||||||||||| || | | |||||||| |||||| Sbjct 52007 GAGGGAATTTCCGGTGGAGCGGTGAAATGCGTAGAGATCGGAAAGAACACCAACGGCGAA 51948 Query 245 GGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATT 304 || |||||| | | |||||||||||| ||||||| |||||||||| ||||| Sbjct 51947 AGCACTCTGCTGGGCCGACACTGACACTGAGAGACGAAAGCTAGGGGAGCAAATGGGATT 51888 Query 305 AGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCAT-AAGTG 363 |||||||| ||||||| ||||||| ||||| |||||||| | | | ||| || | Sbjct 51887 AGATACCCCAGTAGTCCTAGCCGTAATCGATGGATACTAGGCG-CTGTGCGTATCGACCC 51829 Query 364 CTCCGGTGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 | | |||| | ||| ||||| ||||||| || ||||||||||| Sbjct 51828 GTGCAGTGCTGTAGCTAACGCGTTAAGTATCCCGCCTGGGGAGTA 51784 >seq692 Length=163528 Score = 208 bits (230), Expect = 2e-51 Identities = 252/340 (74%), Gaps = 10/340 (3%) Strand=Plus/Plus Query 2 ACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCT 61 ||| ||||| |||||||||||||||| |||||||||||||||||||||||| |||||| Sbjct 8576 ACTCGAGGAAGAAGCCCCGGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGGGGGGGCA 8635 Query 62 AGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTG 121 || ||| | |||||| ||| ||||||||||| |||||| ||| | || | || Sbjct 8636 AGTGTTCTTCGGAATGACTAGGCGTAAAGGGCACGTAGGCGGTGAATCGGGTTGCAAGTT 8695 Query 122 AAAGGCTATGGCTCAACCCCG-GGACTGCTTTTGAAAC---TGCAGGGCTAGAGTGCAGG 177 ||| | | | || || | ||| |||| | ||||| | || || ||||| Sbjct 8696 CAAGTC---GCCAAAAACCGGCGGAATGCTCTCGAAACCAATTCA---CTTGAGTGAGAC 8749 Query 178 AGGGGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAG 237 || || ||| ||| | |||||| |||||||| ||||||| | | ||||| ||| Sbjct 8750 AGAGGAGAGTTTCATTTCGTGTGTAGGGGTGAAATCCGTAGATCTACGAAGGAAGGCCAA 8809 Query 238 TGGCGAAGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAA 297 |||||||| ||| ||| |||||| |||||| ||||||| ||||||||||| Sbjct 8810 AAGCGAAGGCAGCTCTTTGGGTCCCTACTGACGCTGAGGTGCGAAAGCATGGGGAGCAAA 8869 Query 298 CAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGA 337 | ||||||||||||| ||||||||| |||||||||||||| Sbjct 8870 CTGGATTAGATACCCAGGTAGTCCATGCCGTAAACGATGA 8909 Score = 208 bits (230), Expect = 2e-51 Identities = 252/340 (74%), Gaps = 10/340 (3%) Strand=Plus/Plus Query 2 ACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCT 61 ||| ||||| |||||||||||||||| |||||||||||||||||||||||| |||||| Sbjct 14497 ACTCGAGGAAGAAGCCCCGGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGGGGGGGCA 14556 Query 62 AGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTG 121 || ||| | |||||| ||| ||||||||||| |||||| ||| | || | || Sbjct 14557 AGTGTTCTTCGGAATGACTAGGCGTAAAGGGCACGTAGGCGGTGAATCGGGTTGCAAGTT 14616 Query 122 AAAGGCTATGGCTCAACCCCG-GGACTGCTTTTGAAAC---TGCAGGGCTAGAGTGCAGG 177 ||| | | | || || | ||| |||| | ||||| | || || ||||| Sbjct 14617 CAAGTC---GCCAAAAACCGGCGGAATGCTCTCGAAACCAATTCA---CTTGAGTGAGAC 14670 Query 178 AGGGGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAG 237 || || ||| ||| | |||||| |||||||| ||||||| | | ||||| ||| Sbjct 14671 AGAGGAGAGTTTCATTTCGTGTGTAGGGGTGAAATCCGTAGATCTACGAAGGAAGGCCAA 14730 Query 238 TGGCGAAGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAA 297 |||||||| ||| ||| |||||| |||||| ||||||| ||||||||||| Sbjct 14731 AAGCGAAGGCAGCTCTTTGGGTCCCTACTGACGCTGAGGTGCGAAAGCATGGGGAGCAAA 14790 Query 298 CAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGA 337 | ||||||||||||| ||||||||| |||||||||||||| Sbjct 14791 CTGGATTAGATACCCAGGTAGTCCATGCCGTAAACGATGA 14830 >seq598 Length=182560 Score = 190 bits (210), Expect = 5e-46 Identities = 218/293 (74%), Gaps = 0/293 (0%) Strand=Plus/Plus Query 5 TGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGC 64 |||||| |||| || |||||| ||||||||||||||||||| || ||| || ||| Sbjct 140237 TGAGGAATAAGCATCGTCTAACTCTGTGCCAGCAGCCGCGGTAAGACAGAGGATGCAAGC 140296 Query 65 GTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAA 124 |||||||||||| | ||||||||| | || |||||||| || | || || | || ||| Sbjct 140297 GTTATCCGGAATGATTGGGCGTAATGCGTCTGTAGGTGGCTTTTCAAATCCGTCGTCAAA 140356 Query 125 GGCTATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCA 184 | | |||||||||| || || | |||||| | ||| |||| | | ||||||| Sbjct 140357 TCCCAGGGCTCAACCCTGGACAGGCGATGGAAACTACCAAGCTGGAGTACGGTAGGGGCA 140416 Query 185 AGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAA 244 |||||| | ||| |||||||||||||||||| || | | |||||||| |||||| Sbjct 140417 GAGGGAATTTCCGGTGGAGCGGTGAAATGCGTAGAGATCGGAAAGAACACCAACGGCGAA 140476 Query 245 GGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAA 297 || |||||| | | |||||||||||| ||||||| |||||||||| Sbjct 140477 AGCACTCTGCTGGGCCGACACTGACACTGAGAGACGAAAGCTAGGGGAGCAAA 140529 Score = 159 bits (176), Expect = 8e-37 Identities = 181/243 (74%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 5 TGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGC 64 |||||| |||| || |||||| ||||||||||||||||||| || ||| || ||| Sbjct 136732 TGAGGAATAAGCATCGTCTAACTCTGTGCCAGCAGCCGCGGTAAGACAGAGGATGCAAGC 136791 Query 65 GTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAA 124 |||||||||||| | ||||||||| | || |||||||| || | || || | || ||| Sbjct 136792 GTTATCCGGAATGATTGGGCGTAATGCGTCTGTAGGTGGCTTTTCAAATCCGTCGTCAAA 136851 Query 125 GGCTATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCA 184 | | |||||||||| || || | |||||| | ||| |||| | | ||||||| Sbjct 136852 TCCCAGGGCTCAACCCTGGACAGGCGATGGAAACTACCAAGCTGGAGTACGGTAGGGGCA 136911 Query 185 AGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAA 244 |||||| | ||| |||||||||||||||||| || | | |||||||| |||||| Sbjct 136912 GAGGGAATTTCCGGTGGAGCGGTGAAATGCGTAGAGATCGGAAAGAACACCAACGGCGAA 136971 Query 245 GGC 247 || Sbjct 136972 AGC 136974 >seq502 Length=216758 Score = 86.0 bits (94), Expect = 2e-14 Identities = 107/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 77 TACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATGGCTCA 136 || ||||||||||| || |||||||| || | ||||| | || ||| | | |||||| Sbjct 61173 TATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTGAAGTCCGCCGTCAAATCCAAGGGCTCA 61114 Query 137 ACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTGGAATTCCT 196 |||| || || | |||||| ||| |||| | ||||||| |||||| || Sbjct 61113 ACCCTGGACAGGCGGTGGAAACTATCAAGCTGGAGTATGGTAGGGGCAGAGGGAATTTCT 61054 Query 197 AGTGTAGCGGTGAAATGCGTAGATATT 223 ||| |||||||||||||||||| ||| Sbjct 61053 GGTGGAGCGGTGAAATGCGTAGAGATT 61027 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1202858110720