Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20itinerans_20[genbank_20GCA_5F001649415.1_202016-05-21] 28,415 sequences; 455,349,267 total letters Query= AAMG01002193.1 Length=560 Score E Sequences producing significant alignments: (Bits) Value seq1607 178 4e-42 seq597 156 1e-35 seq3787 102 3e-19 >seq1607 Length=65845 Score = 178 bits (196), Expect = 4e-42 Identities = 319/458 (70%), Gaps = 25/458 (5%) Strand=Plus/Minus Query 35 GACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAG-GTGCGGTAACACGCCCTGGA 93 ||||||||||| | |||||| ||||| |||| ||||| | || ||| ||| |||| Sbjct 11665 GACCCGAAACCGATCGATCTAGCCATGAGCAGGTTGAAGAGAGCTCACACAGGCCTTGGA 11606 Query 94 GGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCT 153 || |||||||||| |||| | ||||| |||||||| ||||| |||||||||||||| Sbjct 11605 GGACCGAACCCACGTATGTGGCAAAATACGGGGATGACTTGTGGCTAGGGGTGAAAGGCC 11546 Query 154 AAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGTAGTGCCTCAAGTATC 213 || ||| | ||| |||||||||| || ||||| |||||| |||| || | | || Sbjct 11545 AACCAAGATCGGATATAGCTGGTTTTCCGCGAAATCTATTTCAGTAGAGCGT--ATGATG 11488 Query 214 ACCAT---CGGGGGTAGAGCACTGTTATGGCTAGGGGGTCATTGCGACTTACCAAACCAT 270 | || | | ||||||||||| |||||||| | | | || |||||||| || Sbjct 11487 TCGATGGCCCGAGGTAGAGCACTCAATGGGCTAGGGTGGC--TCCGCCTTACCAACCCCA 11430 Query 271 TGCAAACTCCGAATGC------GCATCAGTTTTACCGCGGGAGTGAGGGCATGGGTGCTA 324 | ||||||||||| | |||| || ||| | || | | ||||||||| Sbjct 11429 GGGAAACTCCGAATACAGGCCGTCATCGTTTGTACAGACAGACTTA----TTGGGTGCTA 11374 Query 325 AGGTCCGTGCCCGAGAGGAGAAGAATCCGGACTATCAGCTAAGGCCCCGAAATGACAGCT 384 || ||| ||||||| || | || || | ||||||| ||| || | || Sbjct 11373 AGATCCAAAGTCGAGAGGGAAACAGCCCAGATCGTACGCTAAGGTCCCTAAGCAATCACT 11314 Query 385 AAGTTAAACTAACGAAGTCTGAT--TGCTAAGACAGCTAGGATGTTGGCTTGGAAGCAGC 442 ||| || || |||| |||| || | |||| | |||| || |||||||||||||| Sbjct 11313 TAGTGGAA--AAGGAAG--TGATCGAGCGATGACAACCAGGAGGTGGGCTTGGAAGCAGC 11258 Query 443 CATTCATTTAAAGAGTGCGTAACAGCTCACTAGTCGAG 480 || || ||| |||| |||||| |||||||| ||| || Sbjct 11257 CA-TCCTTTGAAGAAAGCGTAATAGCTCACTGGTCTAG 11221 >seq597 Length=183504 Score = 156 bits (172), Expect = 1e-35 Identities = 393/589 (67%), Gaps = 50/589 (8%) Strand=Plus/Minus Query 2 CGAGTCCGAACAGGGCGACAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCATG 61 |||||| | ||||||| ||| ||| | | |||||||| | |||||||| ||||| Sbjct 132036 CGAGTCTTCATAGGGCGATTGTCACTGCTTATGGACCCGAACCTGGGTGATCTATCCATG 131977 Query 62 GCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAATT 121 ||||||||||| | ||| | || ||| |||||||||| ||| ||||||| ||| Sbjct 131976 ACCAGGATGAAGCTTGGGTGAAACTAAGTGGTGGTCCGAACCGACTGTTGTTGAAGAATC 131917 Query 122 AGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTCT 181 || ||||||| ||||| ||||||||||| || | | || | || |||||||||||| Sbjct 131916 AGCGGATGAGTTGTGGTTAGGGGTGAAATGCCACTCGAATCTAGAGCTAGCTGGTTCTCC 131857 Query 182 CCGAAAACTATTTAG-----GTAG-TGCCTCAAGTATCACCATC-GGGGGTAGAGCACTG 234 |||||| ||| || |||| || || | |||| ||||||||||||| Sbjct 131856 CCGAAATGCATTGAGGCGCAGTAGTTGACTGGA-------CATCTAAGGGTAGAGCACTG 131804 Query 235 TTATGGCTAGGGG--GTCATTGCGACTTACCAAACCATTGCAAACTCCGAATGCGCATCA 292 || | | | ||| | | ||| ||||||| | |||||||| |||| | | Sbjct 131803 TT-TCGATGTGGGCCGCGAGAGCG--GTACCAAATCGAGGCAAACTCTGAATAC---TAG 131750 Query 293 GTTTTACC---------GCGGG-------------AGTGAGGGCATGGGTGCTAAGGTCC 330 | | ||| | ||| |||||| ||||| | |||| | | Sbjct 131749 ATATGACCCAAAAATAAGAGGGATCAAGGTCGGCCAGTGAGACGATGGGGGATAAGCTTC 131690 Query 331 GTGCCCGAGAGGAGAAGAATCCGGACTATCAGCTAAGGCCCCGAAATGACAGCTAAGTTA 390 | ||||||| || | ||||| | ||||||||||||| ||||||| ||| ||| | Sbjct 131689 ATCGTCGAGAGGGAAACAGCCCGGATCACCAGCTAAGGCCCCTAAATGACCGCTCAGTGA 131630 Query 391 AACTAACGAAGTCTGATTGCTAAGACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATT 450 | || || || | ||| ||||||| | || ||| || | ||||||||| | || Sbjct 131629 TA--AAGGAGGTAGGGGTGCAGAGACAGCCAAGAGGTTTGCCTAAAAGCAGCCA-CCCTT 131573 Query 451 TAAAGAGTGCGTAACAGCTCACTAGTCGAGGAGTCGGGCGTGGATAATAATCGGGTATTA 510 ||||||||| ||| |||||||| |||| || || || || | |||| || Sbjct 131572 GAAAGAGTGCATAATAGCTCACTGATCGAATGCTCTTACGCTGAAGATGAACGGG-GCTA 131514 Query 511 AGTTGTCTACCGAAGCAGTGGGATCATTTATATG-ATCGGTAGGGGAGC 558 || ||| ||||||| ||||||| | | ||| |||||||||||||| Sbjct 131513 AGCGATCTGCCGAAGCTGTGGGAT-GTAAAAATGCATCGGTAGGGGAGC 131466 >seq3787 Length=16741 Score = 102 bits (112), Expect = 3e-19 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 2 CGAGTCCGAACAGGGCGACAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCATG 61 |||||| | ||||||| ||| ||| | | |||||||| | | |||||||| ||||| Sbjct 16565 CGAGTCTTCATAGGGCGATTGTCACTGCTTATGGACCCGAACCTAGGTGATCTATCCATG 16624 Query 62 GCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAATT 121 ||||||||||| | ||| | || ||||||| |||||| ||| |||||||| ||| Sbjct 16625 ACCAGGATGAAGCTTGGGTGAAACTAAGTGGAGGTTCGAACCGACTGATGTTGAAGAATC 16684 Query 122 AGGGGATGAGCTGTGG 137 || ||||||| ||||| Sbjct 16685 AGCGGATGAGTTGTGG 16700 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1689119900160