Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20itinerans_20[genbank_20GCA_5F001649415.1_202016-05-21] 28,415 sequences; 455,349,267 total letters Query= AAMG01002207.1 Length=564 Score E Sequences producing significant alignments: (Bits) Value seq1607 196 2e-47 seq597 152 2e-34 seq293 141 3e-31 seq3198 102 3e-19 seq3 86.0 2e-14 seq511 80.6 9e-13 >seq1607 Length=65845 Score = 196 bits (216), Expect = 2e-47 Identities = 342/490 (70%), Gaps = 27/490 (6%) Strand=Plus/Plus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60 ||||| ||| ||||| |||||| || ||| | | |||| ||||| | |||| Sbjct 9688 TCGACCAGTAGGTCTCACAGTCAGGCAGGCTTATACCATTACGCTCACGAGCTGAAGA-- 9745 Query 61 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAG 120 || || |||| ||||| | | |||||||||| ||| ||||| || ||||||||| Sbjct 9746 AA--AGCTTGAGCCTACCTTCGCACACCTCCGTTACTCTTTAGGAGG-CATCCGCCCCAG 9802 Query 121 TTAAACTACCCACCAGGCACTGTCCCCAACCC---AGA-TCATGGG--CCAAGGTTAGAT 174 |||||||||||| || ||||||| | | ||| | || || | |||||||| Sbjct 9803 AAAAACTACCCACCTCACAGTGTCCCCGCCACCAAAGAATTATCGGTGCTAAGGTTAGGC 9862 Query 175 ATCCACTACGGTCAGAGTGGTATTTCAACAACGACTCCACAACCACTAGCGTGGCCGCAT 234 |||| || | |||||||||||||| | | || | | ||| | || Sbjct 9863 ATCCTTTAACGAAAGAGTGGTATTTCAGGATTGG-TCG--------TTGTGTGTCACCAC 9913 Query 235 CATAGTCTCCCACCTATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAA 294 | ||||||||| |||||||| | | || || | | |||||||||| || Sbjct 9914 C------TCCCACCTAGCCTACACATTCGATCAAGGTTGTCACTGCGAAGCTATAGTAAA 9967 Query 295 GGTCC-CGGGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATT 353 ||| | ||||||||| |||| |||| | | ||||||| || | | | ||| Sbjct 9968 GGTGCACGGGGTCTTACCGTCTAGCCGTTGGTACTCCGCATCTTCACGGAGAATTCCATT 10027 Query 354 TCACCGGGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAAC 413 |||||||| | || |||||||| ||| ||||||||| |||||||||||||||| || Sbjct 10028 TCACCGGGTCCATGTCGGAGACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCGCTAC 10087 Query 414 TTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGG 473 ||| |||||||||||||||||||||||||| |||| |||||| ||||||||||| | Sbjct 10088 TTATGCGACAAGGAATTTCGCTACCTTAGGACAGTTAGAGTTACTGCCGCCGTTTACCAG 10147 Query 474 GGCTTCAATT 483 |||||| ||| Sbjct 10148 GGCTTCCATT 10157 >seq597 Length=183504 Score = 152 bits (168), Expect = 2e-34 Identities = 337/491 (69%), Gaps = 16/491 (3%) Strand=Plus/Plus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60 ||||| || |||| |||||||||||||||| ||| || ||||| | || || Sbjct 130299 TCGACGGGTGGGTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCACTCGAGGGCCAATCTCC 130358 Query 61 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAG 120 || | | |||| |||||||| |||||||||||| |||||||||| | | |||| | Sbjct 130359 GTCCGGCCCGAGGAAACCTTTGCACGCCTCCGTTACCTTTTGGGAGGCCTAT-GCCCTAT 130417 Query 121 TTAAACTACCCACCAGGCACTGTCCCCAACCC---AGATCATGGGCCAAGGTTAGATATC 177 ||||| | ||| | |||||||| || || || || |||||||||| || Sbjct 130418 AGAAACTGTCTACCTGAGACTGTCCCTTGGCCCGTAGGTCCTGACACAAGGTTAGAATTC 130477 Query 178 CACTACGGTCAGAGTGGTATTTCAACAACGACTCCA-CAACCACT-AGCGTGGCCGCATC 235 | | ||||||||||| ||| | | ||| | | || | | |||| || Sbjct 130478 TAGCTCTTCCAGAGTGGTATCTCACTGATGGCTCGGGCCTCGACGGAAGGAGGCCT--TC 130535 Query 236 ATAGTCTCCCACCTATCCTACACA--AACCGCACCGAATGCCAATACCAAGCTATAGTGA 293 | | || ||||||| | |||||| || || || ||| ||||| ||| | | ||| | Sbjct 130536 TTCGCCTTCCACCTAAC-TACACAGGAAAGGC-CCAAAT-CCAATCCCAGGGAACAGTAA 130592 Query 294 AGGTCCCG-GGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAAT 352 || | | |||||||| |||| | ||| | | ||||||| || | | || Sbjct 130593 AGCTTCATAGGGTCTTTCTGTCCAGGTGCGGGTAGTCCGCATCTTCACAGACATGTCTAT 130652 Query 353 TTCACCGGGCCTGTGGTTGAGACAGCAGGGGAG-TCGTTACGCCATTCGTGCAGGTCGGA 411 ||||||| |||| | ||||||| | || || ||||||| |||||| ||||||| Sbjct 130653 TTCACCGAGCCTCTCTCCGAGACAGT-GCCCAGATCATTACGCCTTTCGTGTGGGTCGGA 130711 Query 412 ACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACT 471 ||||||||||||||||||||||||||||||||| ||| |||||| ||||||| | Sbjct 130712 ACTTACCCGACAAGGAATTTCGCTACCTTAGGACCATTAAAGTTACGGTCGCCGTTCATC 130771 Query 472 GGGGCTTCAAT 482 || ||||| || Sbjct 130772 GGAGCTTCGAT 130782 >seq293 Length=321744 Score = 141 bits (156), Expect = 3e-31 Identities = 137/175 (78%), Gaps = 6/175 (3%) Strand=Plus/Minus Query 386 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAT 445 |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 53019 TCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAC 52960 Query 446 GGTTATAGTTACCACCGCCGTTTACTGGGGCTTCAATTACCCGCCTCACACACCACGTGG 505 ||||||||||| |||||||| || |||||||| | ||| ||| || || Sbjct 52959 CGTTATAGTTACGGCCGCCGTTCACCGGGGCTTC-GGTCGCCGGCTC-----CCCTGTCA 52906 Query 506 TGTGCTCACGAGTCCTCTTAACCTTCCAGCACCGGGCAGGCGTCAGTCCGTATAC 560 | | |||| | ||| ||||||| |||| ||||||||||||| || |||| Sbjct 52905 TCAGGTCACCAACTTCCTTGACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATAC 52851 >seq3198 Length=23341 Score = 102 bits (112), Expect = 3e-19 Identities = 112/148 (76%), Gaps = 6/148 (4%) Strand=Plus/Minus Query 407 TCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGT 466 |||||||||||| ||||||||||||| ||||||||||| ||||||||||| ||||||| Sbjct 18343 TCGGAACTTACCGGACAAGGAATTTCACTACCTTAGGACCGTTATAGTTACGGCCGCCGT 18284 Query 467 TTACTGGGGCTTCAATTACCCGCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAA 526 | || |||||||| || || ||| || || | | |||| | ||| | Sbjct 18283 TCACCGGGGCTTCGGTT-GCCAACTC-----CCCTGTCATCAGGTCACTAACTTCCTTGA 18230 Query 527 CCTTCCAGCACCGGGCAGGCGTCAGTCC 554 |||||| |||| ||||||||||||| || Sbjct 18229 CCTTCCGGCACTGGGCAGGCGTCAGCCC 18202 >seq3 Length=1478877 Score = 86.0 bits (94), Expect = 2e-14 Identities = 77/97 (79%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 386 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAT 445 |||||||| | || ||| |||||| ||||||||| | ||| ||||||||||||||| ||| Sbjct 763574 TCGTTACGTCTTTTGTGTAGGTCGAAACTTACCCAATAAGAAATTTCGCTACCTTATGAT 763515 Query 446 GGTTATAGTTACCACCGCCGTTTACTGGGGCTTCAAT 482 |||||||||| | | | || | |||||||| || Sbjct 763514 TGTTATAGTTATCGTTGTCATTCATCGGGGCTTCGAT 763478 >seq511 Length=212602 Score = 80.6 bits (88), Expect = 9e-13 Identities = 76/97 (78%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 386 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAT 445 || ||||||| ||||||||||||||| ||||||||| || || | |||||||| |||| Sbjct 58758 TCATTACGCCTTTCGTGCAGGTCGGACCTTACCCGAAAAAGAGTACCGCTACCTAAGGAC 58817 Query 446 GGTTATAGTTACCACCGCCGTTTACTGGGGCTTCAAT 482 || |||| | ||| || || || | ||||||||| Sbjct 58818 CACTAAAGTTGCGACCACCATTCACCGAGGCTTCAAT 58854 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1701916263040