Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20itinerans_20[genbank_20GCA_5F001649415.1_202016-05-21] 28,415 sequences; 455,349,267 total letters Query= AAMG01002223.1 Length=366 Score E Sequences producing significant alignments: (Bits) Value seq110 143 6e-32 seq598 132 1e-28 seq3342 111 3e-22 seq9 93.3 9e-17 seq103 77.0 7e-12 >seq110 Length=548158 Score = 143 bits (158), Expect = 6e-32 Identities = 208/295 (71%), Gaps = 18/295 (6%) Strand=Plus/Minus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60 |||||||||||| |||||||||||||||||||| | || ||| || | Sbjct 540429 GGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCTCAGATACCGTCAT-----------T 540381 Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120 | ||| ||| | | |||||||||| || | |||| | ||||| ||| ||||| Sbjct 540380 G------TTTCTTCTCCGAGAAAAGAAGTTCACGACCCGTGGG-CCTTCTACCTCCACGC 540328 Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180 | | ||| |||| || ||| |||||| || ||||| |||||||||||||||||| Sbjct 540327 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 540268 Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCAT 240 |||| ||| |||||||||||| ||| ||||| || | ||||||| || | ||| || Sbjct 540267 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGAT 540208 Query 241 CGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAATGGAACGCATCCCCATC 295 | | | || ||| || ||||| | || |||| ||||| ||||| ||| || Sbjct 540207 CATCGCCTTGGTAAGCTATTACCTCACCAACTAGCTAATCAGACGCAAGCCCCTC 540153 >seq598 Length=182560 Score = 132 bits (146), Expect = 1e-28 Identities = 196/279 (70%), Gaps = 18/279 (6%) Strand=Plus/Minus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60 |||||||||||| ||||||| |||||||||||| | || ||| || | Sbjct 136768 GGCTGCTGGCACAGAGTTAGACGATGCTTATTCCTCAGATACCGTCAT-----------T 136720 Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120 | ||| ||| | |||||||||| |||| |||| | ||||| ||| ||||| Sbjct 136719 G------TTTCTTCTTCGAGAAAAGAAGTTCACAACCCGTGGG-CCTTCTACCTCCACGC 136667 Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180 | | ||| |||| || ||| |||||| || ||||| |||| ||||||||||||| Sbjct 136666 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGAAAAATTCCCCACTCCTGCCTCCCGTAG 136607 Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCAT 240 |||| ||| |||||||||||| ||| ||||| | | ||||||| || | |||| || Sbjct 136606 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGCTCATCCTCTCGGACCAGCTATTGAT 136547 Query 241 CGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279 | | | || ||| || ||||| | || |||| ||||| Sbjct 136546 CATCGCCTTGGTAAGCTATTACCTCACCAACTAGCTAAT 136508 Score = 132 bits (146), Expect = 1e-28 Identities = 196/279 (70%), Gaps = 18/279 (6%) Strand=Plus/Minus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60 |||||||||||| ||||||| |||||||||||| | || ||| || | Sbjct 140273 GGCTGCTGGCACAGAGTTAGACGATGCTTATTCCTCAGATACCGTCAT-----------T 140225 Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120 | ||| ||| | |||||||||| |||| |||| | ||||| ||| ||||| Sbjct 140224 G------TTTCTTCTTCGAGAAAAGAAGTTCACAACCCGTGGG-CCTTCTACCTCCACGC 140172 Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180 | | ||| |||| || ||| |||||| || ||||| |||| ||||||||||||| Sbjct 140171 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGAAAAATTCCCCACTCCTGCCTCCCGTAG 140112 Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCAT 240 |||| ||| |||||||||||| ||| ||||| | | ||||||| || | |||| || Sbjct 140111 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGCTCATCCTCTCGGACCAGCTATTGAT 140052 Query 241 CGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279 | | | || ||| || ||||| | || |||| ||||| Sbjct 140051 CATCGCCTTGGTAAGCTATTACCTCACCAACTAGCTAAT 140013 >seq3342 Length=21406 Score = 111 bits (122), Expect = 3e-22 Identities = 197/287 (69%), Gaps = 18/287 (6%) Strand=Plus/Plus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60 |||| ||||||| || ||||||||||||||||| | |||| | ||| | Sbjct 8708 GGCTACTGGCACAGAATTAGCCGATGCTTATTCCT------CATATA-----CCATCATT 8756 Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120 | ||| ||| | | |||||||||| | | |||| | ||||| ||| ||||| Sbjct 8757 G------TTTCTTCTCCGAGAAAAGAAGTTCATGACCCGTGGG-CCTTCTACCTCCACGC 8809 Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180 || | ||| |||| || ||| |||||| || ||||| |||| |||||||||||| Sbjct 8810 GACATTGCTCTGTCAGGCTTTCGCCCATTGCGAAAAATTCCCCACTATTGCCTCCCGTAG 8869 Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCAT 240 | || ||| || ||||| ||| || | |||| || | ||||||| || | ||| || Sbjct 8870 GCGTCTGGGCCATGTCTTAGTCCCGGTATGGGTGATCATCCTCTCGGACCAACTACTGAT 8929 Query 241 CGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAATGGAACGCA 287 | | | || ||| || ||||| | || |||| ||||| |||||| Sbjct 8930 CATCGCCTTGGTAAGCTATTACCTCACCAACTAGCTAATCAAACGCA 8976 >seq9 Length=1257773 Score = 93.3 bits (102), Expect = 9e-17 Identities = 78/96 (81%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 133 TCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCG 192 |||| || ||| |||||| || ||||| ||| |||||||||||||||||||||| ||| Sbjct 1249972 TCAGGCTTTCGCCCATTGCGGAAAATTCCCCACCGCTGCCTCCCGTAGGAGTTTGGGCCG 1250031 Query 193 TGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGA 228 ||||||| | ||| ||||| || | ||||||| || Sbjct 1250032 TGTCTCAATCCCAGTGTGGCTGATCATCCTCTCGGA 1250067 >seq103 Length=561466 Score = 77.0 bits (84), Expect = 7e-12 Identities = 62/75 (83%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 154 AATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGG 213 || |||| |||||||||||||||||||||| ||| |||||||||||| || ||||| Sbjct 343852 AAAATTCGCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCTCAGTGTGGCT 343793 Query 214 GACCTTCCTCTCAGA 228 || | ||||||| || Sbjct 343792 GATCATCCTCTCGGA 343778 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1068496300480