Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20itinerans_20[genbank_20GCA_5F001649415.1_202016-05-21] 28,415 sequences; 455,349,267 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq3436 100 5e-19 seq3700 95.1 2e-17 seq1567 95.1 2e-17 seq1179 95.1 2e-17 seq1041 95.1 2e-17 seq511 95.1 2e-17 seq181 95.1 2e-17 seq2878 91.5 2e-16 seq4661 86.0 1e-14 seq3534 77.0 5e-12 seq3567 73.4 6e-11 >seq3436 Length=20345 Score = 100 bits (110), Expect = 5e-19 Identities = 92/114 (81%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || |||| | ||||||| | ||| || ||| || |||| Sbjct 15963 GTACGAGAGGAACCGTTGA-TTCACAC-AATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 15906 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||||| | || |||||||| |||||||||||||||||||||||| Sbjct 15905 GGCGCGAAGCTACCGTGTGTCGGATTATGACTGAACGCCTCTAAGTCAGAATCC 15852 >seq3700 Length=17523 Score = 95.1 bits (104), Expect = 2e-17 Identities = 91/114 (80%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || |||| | ||||||| | ||| || ||| || |||| Sbjct 9115 GTACGAGAGGAACCGTTGA-TTCACAC-AATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 9058 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||||| | || |||||||| |||||||||||||||| ||||||| Sbjct 9057 GGCGCGAAGCTACCGTGTGTCGGATTATGACTGAACGCCTCTAAGTTAGAATCC 9004 >seq1567 Length=67636 Score = 95.1 bits (104), Expect = 2e-17 Identities = 91/114 (80%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || |||| | ||||||| | ||| || ||| || |||| Sbjct 51212 GTACGAGAGGAACCGTTGA-TTCACAC-AATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 51269 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||||| | || ||||||| |||||||||||||||||||||||| Sbjct 51270 GGCGCGAAGCTACCGTGTGTCAGATTATGACTGAACGCCTCTAAGTCAGAATCC 51323 >seq1179 Length=95034 Score = 95.1 bits (104), Expect = 2e-17 Identities = 91/114 (80%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || |||| | ||||||| | ||| || ||| || |||| Sbjct 15394 GTACGAGAGGAACCGTTGA-TTCACAC-AATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 15451 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||||| | || ||||||| |||||||||||||||||||||||| Sbjct 15452 GGCGCGAAGCTACCGTGTGTCAGATTATGACTGAACGCCTCTAAGTCAGAATCC 15505 >seq1041 Length=108670 Score = 95.1 bits (104), Expect = 2e-17 Identities = 91/114 (80%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || |||| | ||||||| | ||| || ||| || |||| Sbjct 98012 GTACGAGAGGAACCGTTGA-TTCACAC-AATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 98069 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||||| | || ||||||| |||||||||||||||||||||||| Sbjct 98070 GGCGCGAAGCTACCGTGTGTCAGATTATGACTGAACGCCTCTAAGTCAGAATCC 98123 >seq511 Length=212602 Score = 95.1 bits (104), Expect = 2e-17 Identities = 91/114 (80%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || |||| | ||||||| | ||| || ||| || |||| Sbjct 1468 GTACGAGAGGAACCGTTGA-TTCACAC-AATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 1525 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||||| | || ||||||| |||||||||||||||||||||||| Sbjct 1526 GGCGCGAAGCTACCGTGTGTCAGATTATGACTGAACGCCTCTAAGTCAGAATCC 1579 >seq181 Length=427064 Score = 95.1 bits (104), Expect = 2e-17 Identities = 91/114 (80%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || |||| | ||||||| | ||| || ||| || |||| Sbjct 80746 GTACGAGAGGAACCGTTGA-TTCACAC-AATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 80803 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||||| | || ||||||| |||||||||||||||||||||||| Sbjct 80804 GGCGCGAAGCTACCGTGTGTCAGATTATGACTGAACGCCTCTAAGTCAGAATCC 80857 >seq2878 Length=28104 Score = 91.5 bits (100), Expect = 2e-16 Identities = 90/114 (79%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || |||| | ||||||| | ||| || ||| || |||| Sbjct 27266 GTACGAGAGGAACCGTTGA-TTCACAC-AATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 27323 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||| | | || |||||||| ||||||||||||| |||||||||| Sbjct 27324 GGCGCGAAGCTAGCGTGTGTCGGATTATGACTGAACGCCTCTATGTCAGAATCC 27377 Score = 86.0 bits (94), Expect = 1e-14 Identities = 89/114 (78%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||| ||||||| || |||| | ||||||| | || || ||| || |||| Sbjct 18562 GTACGAGCGGAACCGTTGA-TTCACAC-AATTGGTCATCTCGCTTGGTTGAAAAGCCAGT 18505 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||| | | || |||||||| |||||||||||||||||||||||| Sbjct 18504 GGCGCGAAGCTAGCGTGTGTCGGATTATGACTGAACGCCTCTAAGTCAGAATCC 18451 Score = 78.8 bits (86), Expect = 2e-12 Identities = 54/61 (89%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 54 AGGCAGTGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATC 113 || ||||| |||||||||||| | || |||||||| ||||||||||||||||||||||| Sbjct 22090 AGCCAGTGGCGCGAAGCTACCGTGTGTCGGATTATGACTGAACGCCTCTAAGTCAGAATC 22149 Query 114 C 114 | Sbjct 22150 C 22150 >seq4661 Length=9945 Score = 86.0 bits (94), Expect = 1e-14 Identities = 89/114 (78%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || || | | ||||||| | ||| || ||| || |||| Sbjct 5490 GTACGAGAGGAACCGTTGA-TTGACAC-AATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 5433 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||||| | || ||||||| || ||||||||||||||||||||| Sbjct 5432 GGCGCGAAGCTACCGTGTGTGTGATTATGACTTAACGCCTCTAAGTCAGAATCC 5379 >seq3534 Length=19197 Score = 77.0 bits (84), Expect = 5e-12 Identities = 87/114 (76%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||| |||||||||| || |||| | ||||||| | ||| || ||| || | | Sbjct 8057 GTATGAGAGGAACCATTGA-TTCACAC-AATTGGTCATCGCGCTTGGTTGAAAAGCTAAT 8114 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||| ||||||| || |||||||| ||||| |||||||||||||||||| Sbjct 8115 GGCGCGAAACTACCATGTGTCGGATTATGACTGAATGCCTCTAAGTCAGAATCC 8168 >seq3567 Length=18863 Score = 73.4 bits (80), Expect = 6e-11 Identities = 61/74 (82%), Gaps = 2/74 (3%) Strand=Plus/Minus Query 58 AGTGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATG 117 |||| |||||||||||| | || |||||||| ||||||||| |||||||||||||| | Sbjct 18666 AGTGGCGCGAAGCTACCGTGTGTCGGATTATGACTGAACGCCACTAAGTCAGAATCCTAG 18607 Query 118 CCAG--AACGGGGT 129 | || | |||||| Sbjct 18606 CTAGCAATCGGGGT 18593 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 818974498560