Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20itinerans_20[genbank_20GCA_5F001649415.1_202016-05-21] 28,415 sequences; 455,349,267 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq1439 168 5e-37 seq202 158 1e-33 seq125 154 1e-32 seq83 114 1e-20 seq1475 91.5 1e-13 >seq1439 Length=74689 Score = 168 bits (186), Expect = 5e-37 Identities = 547/840 (65%), Gaps = 17/840 (2%) Strand=Plus/Minus Query 61099 TACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATG 61158 ||||||||||| | || ||||||||||||| ||||||||| || |||||| | || | Sbjct 63035 TACAAAAAGGCCGTGGCCTCCTTCTGGACGGCGGAGGAGGTGGACTTGTCCCAGGATCTC 62976 Query 61159 AATGACTGG---GAGCGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCG 61215 ||||| || ||| | || || || || || |||||| ||||| | || Sbjct 62975 TCCCACTGGCATGATCGTCTGTCTGCCGACGAGCACCACTTCATTTCCCATGTCCTCGCC 62916 Query 61216 TTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGAG 61275 || |||||||| || ||||| |||||| ||||| | | || ||| || || Sbjct 62915 TTTTTTGCCGCCTCCGACGGCATCGTCCTCGAGAACCTGGCGACCCGGTTCATGCGCGAC 62856 Query 61276 GTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCAC 61335 || || | | ||||| || ||||||||||||||||| ||||| ||||| ||||| Sbjct 62855 GTCCAGCTTCCTGAGGCCCGCGCCTTCTACGGCTTCCAGATCGCCATCGAGAACATCCAC 62796 Query 61336 TCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGA-GCGGGCGGAACGTGAACG 61394 || |||||||| | | ||| |||| || ||||||| ||| | |||| | || || Sbjct 62795 TCTGAGATGTATTCTCTCCTCCTCGACACCTACATCAAGGACCCCGGCGAGAAGT-CCCG 62737 Query 61395 ATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAA 61454 | ||| ||||||| || || | || | || || || || || ||||| | Sbjct 62736 CCTCTTCCATGCCATTGACACCGTCCCTCCTGTCGCCCGCAAGGCCGAGTGGGCGCTACG 62677 Query 61455 TTGGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGA 61514 ||||| | | | | | |||| | || || | | || || || ||||| Sbjct 62676 CTGGAT---CGGATCCTCTGACTCATTCGCCGAGCGCCTCGTTGCCTTCGCCTGCGTCGA 62620 Query 61515 GGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTAT 61574 ||| | || ||| || || || ||| ||||| ||| | ||||| || || || || Sbjct 62619 GGGCATCTTCTTCTCCGGCTCCTTCTGCGCCATCTTCTGGCTCAAGAAGCGAGGCCTCAT 62560 Query 61575 GCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTT 61634 ||| ||||| ||||| || ||| | || || || ||||||||| | || || || || Sbjct 62559 GCCGGGTCTCACCTTTTCAAACGAGCTCATCTCCCGTGACGAGGGCCTCCACTGCGACTT 62500 Query 61635 TGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGA 61694 || | || || | | ||| || | || ||| | ||||| |||| Sbjct 62499 CGC---CTGCCTCCTCTACAGTCTTCTTCGCAACAAGCTCTCCGAGTACCGTGTCCGTGA 62443 Query 61695 GATTGTTCGTGAGGCGGTAACTATCGAACAGGAATT--TCTGACTGACGCTTTGCCCGTC 61752 || ||| || || || ||||||| |||||| |||| || ||| |||| ||| Sbjct 62442 AATCGTTGCCGATGCCGTTGACATCGAACGGGAATTCGTCTG--CGATGCTCTGCCGGTC 62385 Query 61753 TCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGT 61812 | || |||| |||||| | | || ||| |||||||| || || || ||||| || Sbjct 62384 GCCCTTGTCGGGATGAATGGCGACCTCATGAGTCAGTATATCGAGTTCGTGGCCGATCGC 62325 Query 61813 CTG-TTGGTCGATTTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGATTTCAT 61871 ||| |||| | || || | | | | || || ||||| || || | || Sbjct 62324 CTGCTTGGGGCGCTAGGTTACG-ACAAGTTGTACGGGGCGGCCAACCCCTTCGACTGGAT 62266 Query 61872 GGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTATCA 61931 ||| | || |||||| | || ||||| || || |||||||| | || ||||||||||| Sbjct 62265 GGAGCTCATCTCGCTGCAGGGGAAGACAAACTTCTTCGAGAAGAGGGTCGGCGACTATCA 62206 >seq202 Length=395113 Score = 158 bits (174), Expect = 1e-33 Identities = 366/545 (67%), Gaps = 10/545 (2%) Strand=Plus/Minus Query 61099 TACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATG 61158 ||||| ||||||| || || |||||||||| ||||||||| || |||| ||| | Sbjct 244585 TACAAGAAGGCGGTGGCCTCATTCTGGACGGCGGAGGAGGTGGACCTGTCGCCGGACCTC 244526 Query 61159 AATGACTGGGAGC---GTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCG 61215 | ||| ||| | | || || || | || ||| | || || | || Sbjct 244525 TCCCAGTGGCAGCACCGCCTCTCCGACGACGAGCGCCACTTCGTCTCCCACGTCCTCGCC 244466 Query 61216 TTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGAG 61275 || |||||||| || ||||| |||||| ||||| | | || ||| || || Sbjct 244465 TTTTTTGCCGCCTCCGACGGCATCGTCCTCGAGAACCTCGCCGCCCGCTTCATGCGCGAC 244406 Query 61276 GTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCAC 61335 || ||| | | ||||| || |||||||| ||||||||||| || ||||| ||||| Sbjct 244405 GTCCAACTCCCCGAGGCCCGCGCCTTCTACGGTTTCCAGATTGCAATCGAGAACATCCAC 244346 Query 61336 TCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGA--GCGGGCGGAACGTGAAC 61393 || ||||||||| |||| ||||||||||||||| ||| || | ||| || | Sbjct 244345 TCCGAGATGTACTCCCTTCTACTCGATACGTACATCAAGGACCCCGACCAGAA-GT-TTC 244288 Query 61394 GATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCA 61453 | | ||| | |||||||| | | || ||||| ||||| || || |||||| || Sbjct 244287 GCCTCTTCCACGCCATCGACAACGTCCCCGCGGTCGCCCGGAAGGCCGACTGGGCCCTCC 244228 Query 61454 ATTGGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCG 61513 | ||||| ||| |||| | || | || ||| | | || || || |||| Sbjct 244227 AATGGAT--TGAGTCTTCTGGCT-CCTTCGCCGAGCGACTCGTCGCCTTCGCCTGCGTCG 244171 Query 61514 AGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTA 61573 |||| | |||||| || || || ||| ||||| ||| | ||||| || || || | Sbjct 244170 AGGGCATCTTTTTCTCCGGCTCCTTCTGCGCCATCTTCTGGCTCAAGAAGCGCGGCCTCA 244111 Query 61574 TGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATT 61633 |||||||||| |||||| ||| ||| | || || || ||||||||| | || || || | Sbjct 244110 TGCCCGGTCTCACCTTCTCCAACGAGCTCATCTCCCGTGACGAGGGCCTTCACTGCGACT 244051 Query 61634 TTGCT 61638 ||||| Sbjct 244050 TTGCT 244046 >seq125 Length=520858 Score = 154 bits (170), Expect = 1e-32 Identities = 471/724 (65%), Gaps = 17/724 (2%) Strand=Plus/Minus Query 61099 TACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATG 61158 ||||| ||||||| || ||||| ||||||| ||||||||| ||| |||| ||| | Sbjct 303079 TACAAGAAGGCGGTGGCCTCCTTTTGGACGGCGGAGGAGGTGGATCTGTCGCCGGACGTC 303020 Query 61159 AATGACTGGGAGCGTT---TATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCG 61215 | ||| ||| | | || || || | || ||||| || || | || Sbjct 303019 CCCCATTGGCAGCATCGCCTCTCCCACGACGAGCGCCACTTCATCTCCCACGTTCTTGCT 302960 Query 61216 TTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGAG 61275 ||||| ||||| || ||||| |||||| ||||||| | | || ||| || || Sbjct 302959 TTCTTCGCCGCCTCAGACGGCATCGTCCTTGAGAATCTCGCCGCCCGGTTCATGCGCGAC 302900 Query 61276 GTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCAC 61335 || || | | ||||| || ||||||||||||||||| ||||| ||||| ||||| Sbjct 302899 GTCCAGCTCCCCGAGGCTCGCGCCTTCTACGGCTTCCAGATCGCCATCGAGAACATCCAC 302840 Query 61336 TCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAA--- 61392 || ||||||||| | ||| | || || ||||||| ||| | | ||| ||| Sbjct 302839 TCTGAGATGTACTCCCTCCTCCTGGACACCTACATCAAGGACCCTG----ACGAGAAGAC 302784 Query 61393 -CGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTT 61451 || | ||| ||||||||| ||| | || | || || || || || |||||| | Sbjct 302783 CCGTCTCTTCCGTGCCATCGACACGGTCCCCTCTGTCTCCCGAAAGGCCGACTGGGCCCT 302724 Query 61452 CAATTGGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGT 61511 ||||| | | ||||| | |||| || ||| | | || || || || Sbjct 302723 GCGCTGGAT--TGAATCTTCCGGCT-CGTTTGCCGAGCGAATTGTCGCCTTCGCCTGTGT 302667 Query 61512 CGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACT 61571 |||||| | || ||| ||| || || ||| ||||||||| | ||||| || || || Sbjct 302666 CGAGGGAATCTTCTTCTCTGGCTCCTTCTGCGCTATCTTTTGGCTCAAGAAGCGCGGCCT 302607 Query 61572 TATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGA 61631 ||||| || || |||||| || ||| | || || || ||||||||| | ||||| || Sbjct 302606 CATGCCGGGGCTCACCTTCTCGAACGAGCTTATCTCCCGTGACGAGGGCCTTCATTGCGA 302547 Query 61632 TTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGG 61691 || || || || || | || || || | ||||||||| ||||| | Sbjct 302546 CTTCGC---TTGCCTCCTCTACAGCCTCCTCCGCAACAAGCTGTCGGAGGACCGTGTCCG 302490 Query 61692 TGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGT 61751 | || ||| || || || ||||| | ||| ||| | |||||| | ||||| Sbjct 302489 GGCCATCGTTGCCGACGCTGTTGACATCGAGCGGGAGTTTGTTTGTGACGCCCTTCCCGT 302430 Query 61752 CTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCG 61811 | ||| | || ||||| | | || ||| ||||| || || || || |||||||| Sbjct 302429 AGCCCTCGTTGGGATGAACGGCGACCTTATGAGCCAGTACATAGAGTTCGTGGCCGACCG 302370 Query 61812 TCTG 61815 ||| Sbjct 302369 CCTG 302366 >seq83 Length=609517 Score = 114 bits (126), Expect = 1e-20 Identities = 284/426 (67%), Gaps = 5/426 (1%) Strand=Plus/Plus Query 61213 GCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAG 61272 || ||||| ||||| || || || |||||| ||||| | | || ||| || Sbjct 416253 GCCTTCTTCGCCGCCTCCGATGGCATCGTCGTCGAGAACCTCGCCGCGCGCTTCATGCGC 416312 Query 61273 GAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTC 61332 || || || | | ||||| || |||||||| |||||||| ||||| ||||| || Sbjct 416313 GACGTCCAGCTCCCCGAGGCCCGCGCCTTCTACGGGTTCCAGATCGCCATCGAGAACATC 416372 Query 61333 CACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGA-ACGTGA 61391 ||||| ||||||||| | ||| |||| || ||| ||| ||| | | || | || | Sbjct 416373 CACTCCGAGATGTACTCCCTCCTCCTCGACACCTACGTCAAGGACCCCGACGACAAGT-A 416431 Query 61392 ACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTT 61451 || | ||| | |||||||| || | || || || || || || || |||||| | Sbjct 416432 TCGCCTCTTCCACGCCATCGATACCGTCCCCGCCGTCGCCCGAAAGGCCGACTGGGCCCT 416491 Query 61452 CAATTGGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGT 61511 |||||| | | | ||||| | || | || || | | || || || || Sbjct 416492 TCGCTGGATCG--ATTCCTCCGGCTCC-TTCGCCGAGCGCCTCGTTGCCTTCGCCTGCGT 416548 Query 61512 CGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACT 61571 |||||| | || ||| || || || ||| ||||| ||| | |||||||| || || Sbjct 416549 CGAGGGCATCTTCTTCTCCGGCTCCTTCTGCGCTATCTTCTGGCTCAAGAAACGCGGCCT 416608 Query 61572 TATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGA 61631 |||||||| || |||||| ||| || | || || |||||||||||| | || || || Sbjct 416609 CATGCCCGGCCTCACCTTCTCCAACGAACTCATCTCCCGCGACGAGGGCCTCCACTGCGA 416668 Query 61632 TTTTGC 61637 || || Sbjct 416669 CTTCGC 416674 >seq1475 Length=72375 Score = 91.5 bits (100), Expect = 1e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 65152 CCAAGCATAGAAATGCATCGATGATAATTTTGCATAATTCGGCTCGGCCACATGCATATT 65211 |||||||||||| |||| ||||| || || || |||| |||| | ||| || ||||| Sbjct 31871 CCAAGCATAGAAGTGCAGCGATGTTAGCTTCCCAAAATTTGGCTGGTCCATGTGGATATT 31812 Query 65212 CAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCATGTCAA 65261 | |||||||||||| ||||||| |||||||| |||||||||||| Sbjct 31811 AAGGCTCTGACTCTGATCTATGTAACACCCACGATCAACAGCCATGTCAA 31762 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397430319095600