Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oropetium_20thomaeum_20[genbank_20GCA_5F001182835.1_202015-07-20] 625 sequences; 243,174,629 total letters Query= AAMG01000383.1 Length=435 Score E Sequences producing significant alignments: (Bits) Value seq574 199 1e-48 seq449 197 4e-48 seq24 100 7e-19 >seq574 Length=21206 Score = 199 bits (220), Expect = 1e-48 Identities = 248/334 (74%), Gaps = 12/334 (4%) Strand=Plus/Plus Query 8 GAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCG 67 || ||| |||| |||||||||| |||||||||||||||||||| ||| ||| ||||| | Sbjct 795 GAGGAAGAAGCCCCGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACGGGGGG-GCAAGTG 853 Query 68 TTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGT---TGTGTAAGACAGGTGTGA 124 || ||||||| ||||||||||||| | || ||||||| | | || || ||| Sbjct 854 TTCTTCGGAATGACTGGGCGTAAAGGGCACGTAGGCGGTGAATCGGGTTGAAAG---TGA 910 Query 125 AATCCCCGGGCTTAACCTGG-GAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGAG 183 || | | | || ||| | | ||| | | || ||| ||||| | ||||| Sbjct 911 AAGTCGC---CAAAAAGTGGCGGAATGCTCTCGAAACCAATTCACTTGAGTGAGACAGAG 967 Query 184 GGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGC 243 | | |||||||| | |||||| ||||||| ||||||| | | |||||| |||| || Sbjct 968 GAGAGTGGAATTTCGTGTGTAGGGGTGAAATCCGTAGATCTACGAAGGAACGCCAAAAGC 1027 Query 244 GAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGG 303 ||||||||| | ||||| | || |||||| | ||||||| |||||||| |||||| Sbjct 1028 GAAGGCAGCTCTCTGGG-TCCTACCGACGCTGGGGTGCGAAAGCATGGGGAGCGAACAGG 1086 Query 304 ATTAGATACCCTGGTAGTCCACGCCCTAAACGAT 337 ||||||||||||||||||||| ||| |||||||| Sbjct 1087 ATTAGATACCCTGGTAGTCCATGCCGTAAACGAT 1120 >seq449 Length=27593 Score = 197 bits (218), Expect = 4e-48 Identities = 247/334 (74%), Gaps = 11/334 (3%) Strand=Plus/Plus Query 8 GAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCG 67 || ||| |||| |||||||||| |||||||||||||||||||| ||| ||| ||||| | Sbjct 6136 GAGGAAGAAGCCCCGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACGGGGGG-GCAAGTG 6194 Query 68 TTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGT---TGTGTAAGACAGGTGTGA 124 || ||||||| ||||||||||||| | || ||||||| | | || || ||| Sbjct 6195 TTCTTCGGAATGACTGGGCGTAAAGGGCACGTAGGCGGTGAATCGGGTTGAAAG---TGA 6251 Query 125 AATCCCCGGGCTTAACCTGG-GAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGAG 183 || | | | || ||| | | ||| | | || ||| ||||| | ||||| Sbjct 6252 AAGTCGC---CAAAAAGTGGCGGAATGCTCTCGAAACCAATTCACTTGAGTGAGACAGAG 6308 Query 184 GGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGC 243 | | |||||||| | |||||| ||||||| ||||||| | | |||||| |||| || Sbjct 6309 GAGAGTGGAATTTCGTGTGTAGGGGTGAAATCCGTAGATCTACGAAGGAACGCCAAAAGC 6368 Query 244 GAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGG 303 ||||||||| | ||||| || |||||| | ||||||| |||||||| |||||| Sbjct 6369 GAAGGCAGCTCTCTGGGTCCCTACCGACGCTGGGGTGCGAAAGCATGGGGAGCGAACAGG 6428 Query 304 ATTAGATACCCTGGTAGTCCACGCCCTAAACGAT 337 ||||||||||||||||||||| ||| |||||||| Sbjct 6429 ATTAGATACCCTGGTAGTCCATGCCGTAAACGAT 6462 >seq24 Length=2721981 Score = 100 bits (110), Expect = 7e-19 Identities = 127/171 (74%), Gaps = 3/171 (2%) Strand=Plus/Plus Query 167 ACTAGAGTGTGTCAGAGGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGT 226 ||| ||||| | |||||| | ||||||| |||||| |||||| |||||| | Sbjct 145990 ACTTGAGTGAGACAGAGGAGA-TGGAATTTTGTGTGTAGGGATGAAATCTGTAGATCTAC 146048 Query 227 GGAGGAACACCAATGGCGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAG 286 | |||||| |||| || |||||| | | ||||| || |||||| | ||||| Sbjct 146049 GAAGGAACGCCAAAAGCAAAGGCAACTCTCTGGGTCCGTACCGACGCTGG-GTGTGAAAG 146107 Query 287 CGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCC-CTAAACGA 336 | |||||||| ||||||||||||||||||| ||||||| ||| ||||||| Sbjct 146108 CATGGGGAGCTAACAGGATTAGATACCCTGATAGTCCATGCCGTTAAACGA 146158 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1289591940000