Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oropetium_20thomaeum_20[genbank_20GCA_5F001182835.1_202015-07-20] 625 sequences; 243,174,629 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq15 250 9e-64 seq83 100 1e-18 seq22 91.5 5e-16 >seq15 Length=3529114 Score = 250 bits (276), Expect = 9e-64 Identities = 345/476 (72%), Gaps = 30/476 (6%) Strand=Plus/Minus Query 137 GCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCAC 196 ||||| ||| || |||||||||||||||||||||| | | ||| || |||| |||||| Sbjct 3078131 GCTGCGCCTCAACGCATTTCGGGGAGAACCAGCTAGCTCTGGGTTCGAGTGGCATTTCAC 3078072 Query 197 CCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGT 256 ||||| ||||| |||||| || | | |||||| | ||| ||||||| |||| | || Sbjct 3078071 CCCTAACCACAACTCATCCGCTGATTCTTCAACATCAGTCGGTTCGGACCTCTGCTTAGT 3078012 Query 257 CTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGT-CTTGATC-GTG 314 | | || |||||| |||| |||||||||||||| | ||||||| | | | | ||| Sbjct 3078011 TTCATCCAAGCTTCATCCTGGTCATGGATAGATCACCCAGGTTCGGGTCCATAAGCAGTG 3077952 Query 315 CCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTAC-------CCCACACGGGT 367 || | |||||||| |||||||||||||||||||| | ||| | | Sbjct 3077951 ACAAT----CGCCCTATGAAGACTCGCTTTCGCTACGGCTCCGGTGGGTTCCATTC-CCT 3077897 Query 368 TAACCTCGCGACACAACGCA-AACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCT 426 ||||| || ||| | | | |||| |||||||||||||| |||||||| |||| Sbjct 3077896 TAACCAAGC--CACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCA-GA 3077840 Query 427 GGTACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGC---ACATGGTTTCAGGTACTA 483 | | || ||| |||| || | ||| || || ||||||| || ||| Sbjct 3077839 GATCACT---------TTCTCCTCCCACTGCTTGGGAGCTCAGCACGGTTTCACGTTCTA 3077789 Query 484 TTTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGT 543 ||||||| ||| | ||||| ||||||||||||||||||||||||| | |||||||||| Sbjct 3077788 TTTCACTACCCACTGGGGGTTCTTTTCACCTTTCCCTCACGGTACTACTTCGCTATCGGT 3077729 Query 544 CACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACACGAAATTTCA 599 |||| |||||||||||| |||| |||||||| | |||||||||| ||| || Sbjct 3077728 CACCCAGGAGTATTTAGCCTTACAAGGTGGTCCTTGCTGATTCACACGGGATTCCA 3077673 >seq83 Length=900045 Score = 100 bits (110), Expect = 1e-18 Identities = 108/141 (77%), Gaps = 3/141 (2%) Strand=Plus/Minus Query 152 ATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTC 211 ||||| || |||||||||| | | || ||||||||||||||||| ||||| ||| Sbjct 663912 ATTTCACAGAAAACCAGCTATATCCGATCTTCGTTGGCCTTTCACCCCTAGCCACAAGTC 663853 Query 212 ATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACG--CGGTCTTACCCGCGCTT 269 |||||| | ||| | || || ||||||||||||||||| | | || || | | ||| Sbjct 663852 ATCCCCGTATTTTGCCACATACGTGGGTTCGGTCCTCCAAGGCCTGT-TTGAGCTCTCTT 663794 Query 270 CAACCTGCCCATGGATAGATC 290 |||||||| ||||| |||||| Sbjct 663793 CAACCTGCTCATGGCTAGATC 663773 >seq22 Length=2792836 Score = 91.5 bits (100), Expect = 5e-16 Identities = 88/112 (79%), Gaps = 1/112 (1%) Strand=Plus/Minus Query 137 GCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCAC 196 ||||| ||| || |||||||| ||||||||||| | | | ||| || |||| |||||| Sbjct 2739083 GCTGCGCCTCAACGCATTTCGAGGAGAACCAGC-AGCTCTGGGTTCGAGTGGCATTTCAC 2739025 Query 197 CCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTC 248 ||||| ||||| |||||| || | | |||||| | ||| ||||||| |||| Sbjct 2739024 CCCTAACCACAACTCATCCGCTGATTCTTCAACATCAGTCGGTTCGGACCTC 2738973 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1817588640000