Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Oropetium_20thomaeum_20[genbank_20GCA_5F001182835.1_202015-07-20]
625 sequences; 243,174,629 total letters
Query= AAMG01002175.1
Length=414
Score E
Sequences producing significant alignments: (Bits) Value
seq86 226 7e-57
seq574 170 5e-40
seq449 168 2e-39
>seq86
Length=797191
Score = 226 bits (250), Expect = 7e-57
Identities = 282/388 (73%), Gaps = 30/388 (8%)
Strand=Plus/Plus
Query 20 CCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCA 79
||||| | | |||||||||| ||| |||||||||| ||||||||| | || ||||||||
Sbjct 591015 CCTTCCACCTCCACGCGGCATTGCTCCATCAGGCTTTCGCCCATTGCGGAAAATTCCCCA 591074
Query 80 CTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCT 139
|||||||||||| ||||||||||| |||||||| ||| | |||||||||| |||||||||
Sbjct 591075 CTGCTGCCTCCCCTAGGAGTCTGGGCCGTGTCTTAGTCCTAGTGTGGCTGATCATCCTCT 591134
Query 140 CAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGCTAATCCCAT 199
||||||||| |||| |||||| ||| || ||| || | |||||||||||||| |
Sbjct 591135 TGGACCAGCTACTGATCATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAATCAGAC 591194
Query 200 CTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGGTCTTGCGACGTTATG 259
| | | ||| ||| | | | || |||| || | | | || |
Sbjct 591195 GCGAGCCCCTCCTTGGGTG-----------GATTTCTCTTTTTGCTCCTCAGCC--TACG 591241
Query 260 CGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCAGTTTCCCAGACATTA 319
||||||||| |||||||||||| ||| | ||||||| ||||| ||| | |||||
Sbjct 591242 GGGTATTAGCAACCGTTTCCAGTTGTTGTTCCCCTCCCAAGGGCAGGTTCTTACGCATTA 591301
Query 320 CTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCGACTTG 379
||||| ||| ||||||| ||| || || |||| ||||| ||||||
Sbjct 591302 CTCACTCGTTCGCCACT------GGAAACACCA-----CTTC------CCGTTTGACTTG 591344
Query 380 CATGTGTTAGGCCTGCCGCCAGCGTTCA 407
|||||| || || |||||| ||||||||
Sbjct 591345 CATGTGCTAAGCATGCCGCTAGCGTTCA 591372
>seq574
Length=21206
Score = 170 bits (188), Expect = 5e-40
Identities = 154/193 (80%), Gaps = 2/193 (1%)
Strand=Plus/Minus
Query 4 CTTTACAACCCGAA--GGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCC 61
|||||||| | | | | ||||||||| |||||| || |||| ||| ||||| |||||
Sbjct 760 CTTTACAAGCGGCATTGCCCTTCTTCACTCACGCGATATTGCTGGATCGGGCTTTCGCCC 701
Query 62 ATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 121
||||| ||| |||||||||||||||| ||||| |||||| || |||||||||||| ||||
Sbjct 700 ATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCCAG 641
Query 122 TGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCG 181
|||||||| |||||| |||||||||| | ||| | | || ||| ||| |||||
Sbjct 640 TGTGGCTGATCATCCGAAAAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTTACCTGA 581
Query 182 CCAACTAGCTAAT 194
||||||| |||||
Sbjct 580 CCAACTACCTAAT 568
>seq449
Length=27593
Score = 168 bits (186), Expect = 2e-39
Identities = 154/192 (80%), Gaps = 2/192 (1%)
Strand=Plus/Minus
Query 4 CTTTACAACCCGAAG-GCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCA 62
|||||||| | | | |||||||||| |||||| || |||| ||| ||||| ||||||
Sbjct 6101 CTTTACAAGCGGCATTGCCTTCTTCACTCACGCGATATTGCTGGATCGGGCTTTCGCCCA 6042
Query 63 TTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT 122
|||| ||| |||||||||||||||| ||||| |||||| || |||||||||||| |||||
Sbjct 6041 TTGTCCAAGATTCCCCACTGCTGCC-CCCGTGGGAGTCCGGGCCGTGTCTCAGTCCCAGT 5983
Query 123 GTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGC 182
||||||| |||||| |||||||||| | ||| | | || ||| ||| ||||| |
Sbjct 5982 GTGGCTGATCATCCGAAAAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTTACCTGAC 5923
Query 183 CAACTAGCTAAT 194
|||||| |||||
Sbjct 5922 CAACTACCTAAT 5911
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1222392360000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |