Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oropetium_20thomaeum_20[genbank_20GCA_5F001182835.1_202015-07-20] 625 sequences; 243,174,629 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq86 226 7e-57 seq574 170 5e-40 seq449 168 2e-39 >seq86 Length=797191 Score = 226 bits (250), Expect = 7e-57 Identities = 282/388 (73%), Gaps = 30/388 (8%) Strand=Plus/Plus Query 20 CCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCA 79 ||||| | | |||||||||| ||| |||||||||| ||||||||| | || |||||||| Sbjct 591015 CCTTCCACCTCCACGCGGCATTGCTCCATCAGGCTTTCGCCCATTGCGGAAAATTCCCCA 591074 Query 80 CTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCT 139 |||||||||||| ||||||||||| |||||||| ||| | |||||||||| ||||||||| Sbjct 591075 CTGCTGCCTCCCCTAGGAGTCTGGGCCGTGTCTTAGTCCTAGTGTGGCTGATCATCCTCT 591134 Query 140 CAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGCTAATCCCAT 199 ||||||||| |||| |||||| ||| || ||| || | |||||||||||||| | Sbjct 591135 TGGACCAGCTACTGATCATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAATCAGAC 591194 Query 200 CTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGGTCTTGCGACGTTATG 259 | | | ||| ||| | | | || |||| || | | | || | Sbjct 591195 GCGAGCCCCTCCTTGGGTG-----------GATTTCTCTTTTTGCTCCTCAGCC--TACG 591241 Query 260 CGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCAGTTTCCCAGACATTA 319 ||||||||| |||||||||||| ||| | ||||||| ||||| ||| | ||||| Sbjct 591242 GGGTATTAGCAACCGTTTCCAGTTGTTGTTCCCCTCCCAAGGGCAGGTTCTTACGCATTA 591301 Query 320 CTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCGACTTG 379 ||||| ||| ||||||| ||| || || |||| ||||| |||||| Sbjct 591302 CTCACTCGTTCGCCACT------GGAAACACCA-----CTTC------CCGTTTGACTTG 591344 Query 380 CATGTGTTAGGCCTGCCGCCAGCGTTCA 407 |||||| || || |||||| |||||||| Sbjct 591345 CATGTGCTAAGCATGCCGCTAGCGTTCA 591372 >seq574 Length=21206 Score = 170 bits (188), Expect = 5e-40 Identities = 154/193 (80%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 4 CTTTACAACCCGAA--GGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCC 61 |||||||| | | | | ||||||||| |||||| || |||| ||| ||||| ||||| Sbjct 760 CTTTACAAGCGGCATTGCCCTTCTTCACTCACGCGATATTGCTGGATCGGGCTTTCGCCC 701 Query 62 ATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 121 ||||| ||| |||||||||||||||| ||||| |||||| || |||||||||||| |||| Sbjct 700 ATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCCAG 641 Query 122 TGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCG 181 |||||||| |||||| |||||||||| | ||| | | || ||| ||| ||||| Sbjct 640 TGTGGCTGATCATCCGAAAAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTTACCTGA 581 Query 182 CCAACTAGCTAAT 194 ||||||| ||||| Sbjct 580 CCAACTACCTAAT 568 >seq449 Length=27593 Score = 168 bits (186), Expect = 2e-39 Identities = 154/192 (80%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 4 CTTTACAACCCGAAG-GCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCA 62 |||||||| | | | |||||||||| |||||| || |||| ||| ||||| |||||| Sbjct 6101 CTTTACAAGCGGCATTGCCTTCTTCACTCACGCGATATTGCTGGATCGGGCTTTCGCCCA 6042 Query 63 TTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT 122 |||| ||| |||||||||||||||| ||||| |||||| || |||||||||||| ||||| Sbjct 6041 TTGTCCAAGATTCCCCACTGCTGCC-CCCGTGGGAGTCCGGGCCGTGTCTCAGTCCCAGT 5983 Query 123 GTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGC 182 ||||||| |||||| |||||||||| | ||| | | || ||| ||| ||||| | Sbjct 5982 GTGGCTGATCATCCGAAAAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTTACCTGAC 5923 Query 183 CAACTAGCTAAT 194 |||||| ||||| Sbjct 5922 CAACTACCTAAT 5911 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1222392360000