Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oropetium_20thomaeum_20[genbank_20GCA_5F001182835.1_202015-07-20] 625 sequences; 243,174,629 total letters Query= AAMG01002183.1 Length=408 Score E Sequences producing significant alignments: (Bits) Value seq574 223 8e-56 seq449 223 8e-56 seq126 98.7 2e-18 seq24 96.9 8e-18 >seq574 Length=21206 Score = 223 bits (246), Expect = 8e-56 Identities = 257/340 (76%), Gaps = 12/340 (4%) Strand=Plus/Plus Query 2 ACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCT 61 ||| ||||| |||||||||||||||| |||||||||||||||||||| ||| |||||| Sbjct 791 ACTCGAGGAAGAAGCCCCGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACGG-GGGGGCA 849 Query 62 AGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTG 121 || ||| | |||||| ||||||||||||||| |||||| ||| | || | ||| Sbjct 850 AGTGTTCTTCGGAATGACTGGGCGTAAAGGGCACGTAGGCGGTGAATCGGGTTGAAAGTG 909 Query 122 AAAGGCTATGGCTCAACCCCG-GGACTGCTTTTGAAAC---TGCAGGGCTAGAGTGCAGG 177 |||| | | | || | ||| |||| | ||||| | || || ||||| Sbjct 910 AAAGTC---GCCAAAAAGTGGCGGAATGCTCTCGAAACCAATTCA---CTTGAGTGAGAC 963 Query 178 AGGGGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAG 237 || || ||||||||| | |||||| |||||||| ||||||| | | |||||| ||| Sbjct 964 AGAGGAGAGTGGAATTTCGTGTGTAGGGGTGAAATCCGTAGATCTACGAAGGAACGCCAA 1023 Query 238 TGGCGAAGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAA 297 |||||||| ||| |||| || | ||| ||| || ||||||| |||||||| || Sbjct 1024 AAGCGAAGGCAGCTCTCTGGGTCCTACC-GACGCTGGGGTGCGAAAGCATGGGGAGCGAA 1082 Query 298 CAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGA 337 ||||||||||||||||||||||||| |||||||||||||| Sbjct 1083 CAGGATTAGATACCCTGGTAGTCCATGCCGTAAACGATGA 1122 >seq449 Length=27593 Score = 223 bits (246), Expect = 8e-56 Identities = 256/340 (75%), Gaps = 11/340 (3%) Strand=Plus/Plus Query 2 ACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCT 61 ||| ||||| |||||||||||||||| |||||||||||||||||||| ||| |||||| Sbjct 6132 ACTCGAGGAAGAAGCCCCGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACGG-GGGGGCA 6190 Query 62 AGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTG 121 || ||| | |||||| ||||||||||||||| |||||| ||| | || | ||| Sbjct 6191 AGTGTTCTTCGGAATGACTGGGCGTAAAGGGCACGTAGGCGGTGAATCGGGTTGAAAGTG 6250 Query 122 AAAGGCTATGGCTCAACCCCG-GGACTGCTTTTGAAAC---TGCAGGGCTAGAGTGCAGG 177 |||| | | | || | ||| |||| | ||||| | || || ||||| Sbjct 6251 AAAGTC---GCCAAAAAGTGGCGGAATGCTCTCGAAACCAATTCA---CTTGAGTGAGAC 6304 Query 178 AGGGGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAG 237 || || ||||||||| | |||||| |||||||| ||||||| | | |||||| ||| Sbjct 6305 AGAGGAGAGTGGAATTTCGTGTGTAGGGGTGAAATCCGTAGATCTACGAAGGAACGCCAA 6364 Query 238 TGGCGAAGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAA 297 |||||||| ||| |||| || ||| ||| || ||||||| |||||||| || Sbjct 6365 AAGCGAAGGCAGCTCTCTGGGTCCCTACCGACGCTGGGGTGCGAAAGCATGGGGAGCGAA 6424 Query 298 CAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGA 337 ||||||||||||||||||||||||| |||||||||||||| Sbjct 6425 CAGGATTAGATACCCTGGTAGTCCATGCCGTAAACGATGA 6464 >seq126 Length=224582 Score = 98.7 bits (108), Expect = 2e-18 Identities = 111/146 (76%), Gaps = 2/146 (1%) Strand=Plus/Minus Query 264 ACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCAC 323 |||||||||||| ||||||| |||||||||| |||||||| |||| ||||||| Sbjct 57173 ACTGACACTGAGAGACGAAAGCTAGGGGAGCAAATGGGATTAGAGACCCCAGTAGTCCTA 57114 Query 324 GCCGTAAACGATGAATACTAGGTGTCGGGGCG-CATAAGTGCTCCGGTGCCGCAGCAAAC 382 ||||||||||||| |||||||||| | ||| | | | | |||| | ||| ||| Sbjct 57113 GCCGTAAACGATGGATACTAGGTG-CTATGCGACTCGACCCGTGCAGTGCTGTAGCTAAC 57055 Query 383 GCAATAAGTATTCCACCTGGGGAGTA 408 || ||||| | || ||||||||||| Sbjct 57054 GCGTTAAGTCTCCCGCCTGGGGAGTA 57029 >seq24 Length=2721981 Score = 96.9 bits (106), Expect = 8e-18 Identities = 118/156 (76%), Gaps = 4/156 (3%) Strand=Plus/Plus Query 187 TGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGG 246 ||||||| |||||| | |||||| |||||| | | |||||| ||| || |||| Sbjct 146011 TGGAATTTTGTGTGTAGGGATGAAATCTGTAGATCTACGAAGGAACGCCAAAAGCAAAGG 146070 Query 247 CGGCTTGCTGGA-CTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTA 305 | || |||| | ||| | ||| ||| | | |||||| |||||||| |||||||||| Sbjct 146071 CAACTCTCTGGGTCCGTACC-GACGCTGGGTGT-GAAAGCATGGGGAGCTAACAGGATTA 146128 Query 306 GATACCCTGGTAGTCCACGCCG-TAAACGATGAATA 340 ||||||||| ||||||| |||| ||||||| || || Sbjct 146129 GATACCCTGATAGTCCATGCCGTTAAACGACGAGTA 146164 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203192480000