Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Oropetium_20thomaeum_20[genbank_20GCA_5F001182835.1_202015-07-20]
625 sequences; 243,174,629 total letters
Query= AAMG01002183.1
Length=408
Score E
Sequences producing significant alignments: (Bits) Value
seq574 223 8e-56
seq449 223 8e-56
seq126 98.7 2e-18
seq24 96.9 8e-18
>seq574
Length=21206
Score = 223 bits (246), Expect = 8e-56
Identities = 257/340 (76%), Gaps = 12/340 (4%)
Strand=Plus/Plus
Query 2 ACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCT 61
||| ||||| |||||||||||||||| |||||||||||||||||||| ||| ||||||
Sbjct 791 ACTCGAGGAAGAAGCCCCGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACGG-GGGGGCA 849
Query 62 AGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTG 121
|| ||| | |||||| ||||||||||||||| |||||| ||| | || | |||
Sbjct 850 AGTGTTCTTCGGAATGACTGGGCGTAAAGGGCACGTAGGCGGTGAATCGGGTTGAAAGTG 909
Query 122 AAAGGCTATGGCTCAACCCCG-GGACTGCTTTTGAAAC---TGCAGGGCTAGAGTGCAGG 177
|||| | | | || | ||| |||| | ||||| | || || |||||
Sbjct 910 AAAGTC---GCCAAAAAGTGGCGGAATGCTCTCGAAACCAATTCA---CTTGAGTGAGAC 963
Query 178 AGGGGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAG 237
|| || ||||||||| | |||||| |||||||| ||||||| | | |||||| |||
Sbjct 964 AGAGGAGAGTGGAATTTCGTGTGTAGGGGTGAAATCCGTAGATCTACGAAGGAACGCCAA 1023
Query 238 TGGCGAAGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAA 297
|||||||| ||| |||| || | ||| ||| || ||||||| |||||||| ||
Sbjct 1024 AAGCGAAGGCAGCTCTCTGGGTCCTACC-GACGCTGGGGTGCGAAAGCATGGGGAGCGAA 1082
Query 298 CAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGA 337
||||||||||||||||||||||||| ||||||||||||||
Sbjct 1083 CAGGATTAGATACCCTGGTAGTCCATGCCGTAAACGATGA 1122
>seq449
Length=27593
Score = 223 bits (246), Expect = 8e-56
Identities = 256/340 (75%), Gaps = 11/340 (3%)
Strand=Plus/Plus
Query 2 ACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCT 61
||| ||||| |||||||||||||||| |||||||||||||||||||| ||| ||||||
Sbjct 6132 ACTCGAGGAAGAAGCCCCGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACGG-GGGGGCA 6190
Query 62 AGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTG 121
|| ||| | |||||| ||||||||||||||| |||||| ||| | || | |||
Sbjct 6191 AGTGTTCTTCGGAATGACTGGGCGTAAAGGGCACGTAGGCGGTGAATCGGGTTGAAAGTG 6250
Query 122 AAAGGCTATGGCTCAACCCCG-GGACTGCTTTTGAAAC---TGCAGGGCTAGAGTGCAGG 177
|||| | | | || | ||| |||| | ||||| | || || |||||
Sbjct 6251 AAAGTC---GCCAAAAAGTGGCGGAATGCTCTCGAAACCAATTCA---CTTGAGTGAGAC 6304
Query 178 AGGGGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAG 237
|| || ||||||||| | |||||| |||||||| ||||||| | | |||||| |||
Sbjct 6305 AGAGGAGAGTGGAATTTCGTGTGTAGGGGTGAAATCCGTAGATCTACGAAGGAACGCCAA 6364
Query 238 TGGCGAAGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAA 297
|||||||| ||| |||| || ||| ||| || ||||||| |||||||| ||
Sbjct 6365 AAGCGAAGGCAGCTCTCTGGGTCCCTACCGACGCTGGGGTGCGAAAGCATGGGGAGCGAA 6424
Query 298 CAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGA 337
||||||||||||||||||||||||| ||||||||||||||
Sbjct 6425 CAGGATTAGATACCCTGGTAGTCCATGCCGTAAACGATGA 6464
>seq126
Length=224582
Score = 98.7 bits (108), Expect = 2e-18
Identities = 111/146 (76%), Gaps = 2/146 (1%)
Strand=Plus/Minus
Query 264 ACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCAC 323
|||||||||||| ||||||| |||||||||| |||||||| |||| |||||||
Sbjct 57173 ACTGACACTGAGAGACGAAAGCTAGGGGAGCAAATGGGATTAGAGACCCCAGTAGTCCTA 57114
Query 324 GCCGTAAACGATGAATACTAGGTGTCGGGGCG-CATAAGTGCTCCGGTGCCGCAGCAAAC 382
||||||||||||| |||||||||| | ||| | | | | |||| | ||| |||
Sbjct 57113 GCCGTAAACGATGGATACTAGGTG-CTATGCGACTCGACCCGTGCAGTGCTGTAGCTAAC 57055
Query 383 GCAATAAGTATTCCACCTGGGGAGTA 408
|| ||||| | || |||||||||||
Sbjct 57054 GCGTTAAGTCTCCCGCCTGGGGAGTA 57029
>seq24
Length=2721981
Score = 96.9 bits (106), Expect = 8e-18
Identities = 118/156 (76%), Gaps = 4/156 (3%)
Strand=Plus/Plus
Query 187 TGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGG 246
||||||| |||||| | |||||| |||||| | | |||||| ||| || ||||
Sbjct 146011 TGGAATTTTGTGTGTAGGGATGAAATCTGTAGATCTACGAAGGAACGCCAAAAGCAAAGG 146070
Query 247 CGGCTTGCTGGA-CTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTA 305
| || |||| | ||| | ||| ||| | | |||||| |||||||| ||||||||||
Sbjct 146071 CAACTCTCTGGGTCCGTACC-GACGCTGGGTGT-GAAAGCATGGGGAGCTAACAGGATTA 146128
Query 306 GATACCCTGGTAGTCCACGCCG-TAAACGATGAATA 340
||||||||| ||||||| |||| ||||||| || ||
Sbjct 146129 GATACCCTGATAGTCCATGCCGTTAAACGACGAGTA 146164
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203192480000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |