Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oropetium_20thomaeum_20[genbank_20GCA_5F001182835.1_202015-07-20] 625 sequences; 243,174,629 total letters Query= AAMG01002193.1 Length=560 Score E Sequences producing significant alignments: (Bits) Value seq15 176 2e-41 seq83 123 8e-26 seq22 80.6 9e-13 >seq15 Length=3529114 Score = 176 bits (194), Expect = 2e-41 Identities = 394/582 (68%), Gaps = 36/582 (6%) Strand=Plus/Plus Query 2 CGAGTCCGAACAGGGCGACAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCATG 61 |||||| | ||||||| ||| ||| | | |||||||| | |||||||| ||||| Sbjct 3077930 CGAGTCTTCATAGGGCGATTGTCACTGCTTATGGACCCGAACCTGGGTGATCTATCCATG 3077989 Query 62 GCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAATT 121 ||||||||||| | | | | || |||||||||||| ||| |||||||| ||| Sbjct 3077990 ACCAGGATGAAGCTTGGATGAAACTAAGCAGAGGTCCGAACCGACTGATGTTGAAGAATC 3078049 Query 122 AGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTCT 181 || ||||||| ||||| ||||||||||| || | | ||| || |||||||||||| Sbjct 3078050 AGCGGATGAGTTGTGGTTAGGGGTGAAATGCCACTCGAACCCAGAGCTAGCTGGTTCTCC 3078109 Query 182 CCGAAAACTATTTAGGTAGTGCCTCAAGTATCAC----CATCG-GGGGTAGAGCACTGTT 236 |||||| || ||| || ||| | || |||| |||||| ||||||||| Sbjct 3078110 CCGAAATGCGTTGAGGCGCAGC----AGT-TGACTGGACATCTAGGGGTAAAGCACTGTT 3078164 Query 237 ATGGCTAGGGGGTCATTGCGACTTACCAAACCATTGCAAACTCCGAATGCGC---AT--- 290 | | ||| | | | ||||||| | |||||||| |||| | || Sbjct 3078165 TCAG-TGCGGGCTGCGCGAGCGGTACCAAATCGAGGCAAACTCTGAATACTAGATATGAC 3078223 Query 291 --CAGTTTTACCGCGGG-----------AGTGAGGGCATGGGTGCTAAGGTCCGTGCCCG 337 || | || | || |||||| ||||| | |||| | | | || Sbjct 3078224 CCCAAAATAACAGGGGTCAAGGTCGGCCAGTGAGACGATGGGGGATAAGCTTCATCGTCG 3078283 Query 338 AGAGGAGAAGAATCCGGACTATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAAC 397 ||||| || | ||||| | ||||||||||||| ||||||| ||| ||| | | || Sbjct 3078284 AGAGGGAAACAGCCCGGATCACCAGCTAAGGCCCCTAAATGACCGCTCAGTGATA--AAG 3078341 Query 398 GAAGTCTGATTGCTAAGACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAG 457 || || | ||| |||||||| |||| ||| || | |||||||||| | ||||||||| Sbjct 3078342 GAGGTGGGGGTGCAAAGACAGCCAGGAGGTTTGCCTAGAAGCAGCCA-CCCTTTAAAGAG 3078400 Query 458 TGCGTAACAGCTCACTAGTCGAGGAGTCGGGCGTGGATAATAATCGGGTATTAAGTTGTC 517 ||||||| |||||||| ||||| | ||| || || | | || |||| || Sbjct 3078401 TGCGTAATAGCTCACTGATCGAGCGCCCTTGCGCTGAAGATGAACTGG-GCTAAGCGATC 3078459 Query 518 TACCGAAGCAGTGGGATCATTTATATG-ATCGGTAGGGGAGC 558 | ||||||| ||||||| || | ||| |||||||||||||| Sbjct 3078460 TGCCGAAGCTGTGGGAT-GTTAAAATGCATCGGTAGGGGAGC 3078500 >seq83 Length=900045 Score = 123 bits (136), Expect = 8e-26 Identities = 130/170 (76%), Gaps = 1/170 (1%) Strand=Plus/Plus Query 35 GACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAG-GTGCGGTAACACGCCCTGGA 93 |||| |||||| | |||||| ||||| |||| ||||| | || |||| ||| |||| Sbjct 663758 GACCTGAAACCGATCGATCTAGCCATGAGCAGGTTGAAGAGAGCTCAAACAGGCCTTGGA 663817 Query 94 GGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCT 153 || |||||||||| |||| | ||||| |||||||| ||||| |||||||||||||| Sbjct 663818 GGACCGAACCCACGTATGTGGCAAAATACGGGGATGACTTGTGGCTAGGGGTGAAAGGCC 663877 Query 154 AAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGTAGTGC 203 || || | ||| |||||||||| ||| |||| |||| | |||| || Sbjct 663878 AACGAAGATCGGATATAGCTGGTTTTCTGTGAAATCTATGTCAGTAGAGC 663927 >seq22 Length=2792836 Score = 80.6 bits (88), Expect = 9e-13 Identities = 76/96 (79%), Gaps = 1/96 (1%) Strand=Plus/Plus Query 92 GAGGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGG 151 |||||||||||| ||| |||||||| ||| || ||||||| ||||| ||||||||||| | Sbjct 2738973 GAGGTCCGAACCGACTGATGTTGAAGAATCAGCGGATGAGTTGTGGTTAGGGGTGAAATG 2739032 Query 152 CTAAACAAACTTGGAAATAGCTGGTTCTCTCCGAAA 187 | | | ||| || | |||||||||| ||||| Sbjct 2739033 CCACTCGAACCCAGAGCT-GCTGGTTCTCCTCGAAA 2739067 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1689589440000