Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oropetium_20thomaeum_20[genbank_20GCA_5F001182835.1_202015-07-20] 625 sequences; 243,174,629 total letters Query= AAMG01002207.1 Length=564 Score E Sequences producing significant alignments: (Bits) Value seq15 183 1e-43 seq1 129 2e-27 seq113 80.6 9e-13 >seq15 Length=3529114 Score = 183 bits (202), Expect = 1e-43 Identities = 394/572 (69%), Gaps = 28/572 (5%) Strand=Plus/Minus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTC-ACCACCTGATTGC 59 ||||| || ||||| |||||||||||||||| ||| || ||||| | ||| || | Sbjct 3079736 TCGACGGGTGAGTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCACTCGAGGACCA-ATGTC 3079678 Query 60 CAACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCA 119 | | | | |||| |||||||| |||||||||||| |||||||||| | || |||||| Sbjct 3079677 CGTCTGGCCCGAGGAAACCTTTGCACGCCTCCGTTACCTTTTGGGAGGCCTAC-GCCCCA 3079619 Query 120 GTTAAACTACCCACCAGGCACTGTCCCCAACCCAGA---TCATGGGCCAAGGTTAGATAT 176 ||||| | ||| | |||||||| || | || || |||||||||| || Sbjct 3079618 TAGAAACTGTCTACCTGAGACTGTCCCTTGGCCCGCGGGTC-TGACACAAGGTTAGA-AT 3079561 Query 177 CC-ACTACGGTCAGAGTGGTATTTCAACAACGACTC---CACAACCACTAGCGTGGCCGC 232 || | | ||||||||||| ||| | | ||| | | || || | |||| Sbjct 3079560 CCGAGCTCTTCCAGAGTGGTATCTCACTGATGGCTCGGGCCCCCCCGGAAGGG-GGCCT- 3079503 Query 233 ATCATAGTCTCCCACCTATCCTACACA--AACCGCACCGAATGCCAATACCAAGCTATAG 290 || | | || ||||||| || | || || || | || ||||| ||| | | || Sbjct 3079502 -TCTTCGCCTTCCACCTAAGCTGCGCAGGAAAGGCCC--AAACCCAATCCCAGGGAACAG 3079446 Query 291 TGAAGGTCCCG-GGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGC 349 | ||| | | |||||||| |||| | || | | ||||||| || | | Sbjct 3079445 TAAAGCTTCATAGGGTCTTTCTGTCCAGGTGCAGGTAGTCCGCATCTTCACAGACATGTC 3079386 Query 350 AATTTCACCGGGCCTGTGGTTGAGACAGCAGGGGAG-TCGTTACGCCATTCGTGCAGGTC 408 ||||||||| |||| | ||||||| | || |||||||||| ||||||| |||| Sbjct 3079385 TATTTCACCGAGCCTCTCTCCGAGACAGT-GCCCAGATCGTTACGCCTTTCGTGCGGGTC 3079327 Query 409 GGAACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTT 468 |||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| Sbjct 3079326 GGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTC 3079267 Query 469 ACTGGGGCTTCAATTACCCGCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACC 528 || |||||||| | || || | || || | | |||| | ||| ||| Sbjct 3079266 ACCGGGGCTTCGGTCGCCGGCTT------CCCTGTCATCAGTTCACCAACTTCCTTGACC 3079213 Query 529 TTCCAGCACCGGGCAGGCGTCAGTCCGTATAC 560 |||| |||| ||||||||||||| || |||| Sbjct 3079212 TTCCGGCACTGGGCAGGCGTCAGCCCCCATAC 3079181 >seq1 Length=7984747 Score = 129 bits (142), Expect = 2e-27 Identities = 108/130 (83%), Gaps = 2/130 (2%) Strand=Plus/Minus Query 351 ATTTCACCGGGCCTGTGGTTGAGACAGCAGGGGAG-TCGTTACGCCATTCGTGCAGGTCG 409 ||||||||| |||| | ||||||| | || |||| ||||| ||||||| ||||| Sbjct 2001262 ATTTCACCGAGCCTCTCTCCGAGACAGT-GCCCAGATCGTCACGCCTTTCGTGCGGGTCG 2001204 Query 410 GAACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTA 469 ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| | Sbjct 2001203 GAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTCA 2001144 Query 470 CTGGGGCTTC 479 | | |||||| Sbjct 2001143 CCGAGGCTTC 2001134 >seq113 Length=353742 Score = 80.6 bits (88), Expect = 9e-13 Identities = 97/128 (76%), Gaps = 3/128 (2%) Strand=Plus/Plus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTC-ACCACCTGATTGC 59 ||||| || ||||| |||||||||||||||| ||| || ||||| | ||| || | Sbjct 343145 TCGACGGGTGAGTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCACTCGAGGACCA-ATGTC 343203 Query 60 CAACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCA 119 | | | | |||| |||||||| |||||||||||| |||||||||| | | ||||||| Sbjct 343204 CGTCTGGCCCGAGGAAACCTTTGCACGCCTCCGTTACCTTTTGGGAGGCCTA-CGCCCCA 343262 Query 120 GTTAAACT 127 ||||| Sbjct 343263 TAGAAACT 343270 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1702389360000