Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Oropetium_20thomaeum_20[genbank_20GCA_5F001182835.1_202015-07-20]
625 sequences; 243,174,629 total letters
Query= AAMG01002207.1
Length=564
Score E
Sequences producing significant alignments: (Bits) Value
seq15 183 1e-43
seq1 129 2e-27
seq113 80.6 9e-13
>seq15
Length=3529114
Score = 183 bits (202), Expect = 1e-43
Identities = 394/572 (69%), Gaps = 28/572 (5%)
Strand=Plus/Minus
Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTC-ACCACCTGATTGC 59
||||| || ||||| |||||||||||||||| ||| || ||||| | ||| || |
Sbjct 3079736 TCGACGGGTGAGTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCACTCGAGGACCA-ATGTC 3079678
Query 60 CAACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCA 119
| | | | |||| |||||||| |||||||||||| |||||||||| | || ||||||
Sbjct 3079677 CGTCTGGCCCGAGGAAACCTTTGCACGCCTCCGTTACCTTTTGGGAGGCCTAC-GCCCCA 3079619
Query 120 GTTAAACTACCCACCAGGCACTGTCCCCAACCCAGA---TCATGGGCCAAGGTTAGATAT 176
||||| | ||| | |||||||| || | || || |||||||||| ||
Sbjct 3079618 TAGAAACTGTCTACCTGAGACTGTCCCTTGGCCCGCGGGTC-TGACACAAGGTTAGA-AT 3079561
Query 177 CC-ACTACGGTCAGAGTGGTATTTCAACAACGACTC---CACAACCACTAGCGTGGCCGC 232
|| | | ||||||||||| ||| | | ||| | | || || | ||||
Sbjct 3079560 CCGAGCTCTTCCAGAGTGGTATCTCACTGATGGCTCGGGCCCCCCCGGAAGGG-GGCCT- 3079503
Query 233 ATCATAGTCTCCCACCTATCCTACACA--AACCGCACCGAATGCCAATACCAAGCTATAG 290
|| | | || ||||||| || | || || || | || ||||| ||| | | ||
Sbjct 3079502 -TCTTCGCCTTCCACCTAAGCTGCGCAGGAAAGGCCC--AAACCCAATCCCAGGGAACAG 3079446
Query 291 TGAAGGTCCCG-GGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGC 349
| ||| | | |||||||| |||| | || | | ||||||| || | |
Sbjct 3079445 TAAAGCTTCATAGGGTCTTTCTGTCCAGGTGCAGGTAGTCCGCATCTTCACAGACATGTC 3079386
Query 350 AATTTCACCGGGCCTGTGGTTGAGACAGCAGGGGAG-TCGTTACGCCATTCGTGCAGGTC 408
||||||||| |||| | ||||||| | || |||||||||| ||||||| ||||
Sbjct 3079385 TATTTCACCGAGCCTCTCTCCGAGACAGT-GCCCAGATCGTTACGCCTTTCGTGCGGGTC 3079327
Query 409 GGAACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTT 468
|||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 3079326 GGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTC 3079267
Query 469 ACTGGGGCTTCAATTACCCGCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACC 528
|| |||||||| | || || | || || | | |||| | ||| |||
Sbjct 3079266 ACCGGGGCTTCGGTCGCCGGCTT------CCCTGTCATCAGTTCACCAACTTCCTTGACC 3079213
Query 529 TTCCAGCACCGGGCAGGCGTCAGTCCGTATAC 560
|||| |||| ||||||||||||| || ||||
Sbjct 3079212 TTCCGGCACTGGGCAGGCGTCAGCCCCCATAC 3079181
>seq1
Length=7984747
Score = 129 bits (142), Expect = 2e-27
Identities = 108/130 (83%), Gaps = 2/130 (2%)
Strand=Plus/Minus
Query 351 ATTTCACCGGGCCTGTGGTTGAGACAGCAGGGGAG-TCGTTACGCCATTCGTGCAGGTCG 409
||||||||| |||| | ||||||| | || |||| ||||| ||||||| |||||
Sbjct 2001262 ATTTCACCGAGCCTCTCTCCGAGACAGT-GCCCAGATCGTCACGCCTTTCGTGCGGGTCG 2001204
Query 410 GAACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTA 469
||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |
Sbjct 2001203 GAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTCA 2001144
Query 470 CTGGGGCTTC 479
| | ||||||
Sbjct 2001143 CCGAGGCTTC 2001134
>seq113
Length=353742
Score = 80.6 bits (88), Expect = 9e-13
Identities = 97/128 (76%), Gaps = 3/128 (2%)
Strand=Plus/Plus
Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTC-ACCACCTGATTGC 59
||||| || ||||| |||||||||||||||| ||| || ||||| | ||| || |
Sbjct 343145 TCGACGGGTGAGTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCACTCGAGGACCA-ATGTC 343203
Query 60 CAACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCA 119
| | | | |||| |||||||| |||||||||||| |||||||||| | | |||||||
Sbjct 343204 CGTCTGGCCCGAGGAAACCTTTGCACGCCTCCGTTACCTTTTGGGAGGCCTA-CGCCCCA 343262
Query 120 GTTAAACT 127
|||||
Sbjct 343263 TAGAAACT 343270
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1702389360000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |