Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oropetium_20thomaeum_20[genbank_20GCA_5F001182835.1_202015-07-20] 625 sequences; 243,174,629 total letters Query= NC_031903.1 Length=172345 Score E Sequences producing significant alignments: (Bits) Value seq15 641 4e-179 seq72 165 9e-36 seq28 84.2 2e-11 >seq15 Length=3529114 Score = 641 bits (710), Expect = 4e-179 Identities = 754/1012 (75%), Gaps = 7/1012 (1%) Strand=Plus/Minus Query 161527 GACGACTGGCTTAAACGAGATCGTTTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTTTT 161586 ||||||||| | | | || |||||||||||||| || ||||| || || | || ||| Sbjct 3061853 GACGACTGGTTACGAAGGGACCGTTTCGTTTTTGTAGGATGGTCCGGCCTATTGCTCTTT 3061794 Query 161587 CCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGCACGACTTTCGCTACGAGCTGG 161646 || ||||||| | ||| | || |||||| |||| || || ||||| | || ||| Sbjct 3061793 CCTTGTGCTTATTTCGCTTTAGGGGGTTGGTTTACAGGGACTACTTTTGTAACTTCTTGG 3061734 Query 161647 TATACCCATGGACTCGCTAGTTCCTATCTTGAGGGT-GCAAATTTTCTTA-CAGCGGCAG 161704 |||||||||||| | |||||||||||| | || ||| |||| ||||||| | ||||||| Sbjct 3061733 TATACCCATGGATTGGCTAGTTCCTATTTGGAAGGTTGCAA--TTTCTTAACGGCGGCAG 3061676 Query 161705 TTAGCACTCCAGCTGACGCTATGGGTCATTCTCTTCTTCTTCTCTGGGGTCCTGAGGCTC 161764 || ||| || ||| | | | | || ||| | | || || ||||| || || || | Sbjct 3061675 TTTCCACCCCTGCTAATAGTTTAGCACACTCTTTGTTGCTACTATGGGGACCGGAAGCAC 3061616 Query 161765 AAGGGGATTTCGTCAGGTGGATCCAACTTGGGGGACTCTGGAATTTTGTGGCGCTCCACG 161824 |||||||||| | ||| |||| | ||||| || |||| |||||| || ||||| | Sbjct 3061615 AAGGGGATTTTACTCGTTGGTGCCAATTAGGGGGTCTGTGGACTTTTGTCGCTCTCCATG 3061556 Query 161825 GGGCTTTCGCTCTGATTGGATTCATGCTTCGTCAGTTTGAACTTGCTCG-TCTTATCGGT 161883 ||||||| || || || || |||||| | ||||| |||||||||||| | ||| || | Sbjct 3061555 GGGCTTTTGCACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTAGGTCTGTTCAAT 3061496 Query 161884 ATCCGTCCTTACAATGCTATTGCTTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTT 161943 | || ||||| ||||| ||| | ||||||||||| || ||||||||||| ||| || Sbjct 3061495 -TGCGGCCTTATAATGCAATTTCATTCTCTGGTCCAATCGCTGTTTTTGTTTCCGTATTC 3061437 Query 161944 CTCATATATCCTCTGGGACAGTCGTCCTGGTTCTTCGCGCCATCGTTTGGGGTTGCCGCT 162003 || || ||||| |||||||| || |||||||| || || ||||| || || ||| Sbjct 3061436 CTTATTTATCCACTGGGACAATCTGGTTGGTTCTTTGCACCGAGTTTTGGCGTAGCAGCT 3061377 Query 162004 ATTTTCAGGTTCTTACTTTTCCTACAAGGTTTCCACAATTGGACGCTTAATCCGTTCCAC 162063 || || | ||| | |||||| | ||||| || || ||||||||| | || || || || Sbjct 3061376 ATATTTCGATTCATCCTTTTCTTCCAAGGATTTCATAATTGGACGTTGAACCCCTTTCAT 3061317 Query 162064 ATGATGGGTGTCGCAGGTATCTTGGGTGGTGCTTTGCTCTCTGCTATTCACGGTGTGACT 162123 |||||||| || || || | || |||| ||| | || | |||||||| || | ||| Sbjct 3061316 ATGATGGGAGTTGCCGGAGTATTAGGTGCAGCTCTCCTATGCGCTATTCATGGGGCTACT 3061257 Query 162124 GTTGAAAACACGCTCTACCAAGATGGTGAACAAGCAAATACTTTCAAGGCTTTTGACTCT 162183 || |||||||| || | | |||||||||| |||||||| ||| |||||| || | Sbjct 3061256 GTAGAAAACACTCTATTCGAAGATGGTGATGGTGCAAATACCTTCCGAGCTTTTAACCCC 3061197 Query 162184 ACGCAAGAGGAGGAGACTTACTCGATGGTTACTGCGAACCGTTTCTGGTCACAGATCTTC 162243 || |||| ||| || ||||| || ||||| || || ||||| || ||||| || ||||| Sbjct 3061196 ACTCAAGCGGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCCCAAATCTTT 3061137 Query 162244 GGTATTGCTTTTAGTAATAAGCGTTGGTTGCATTTCTTTATGCTCTTCGTTCCCGTCATG 162303 ||| |||||||| ||||| |||||||| |||||||||||||| || || ||||||| Sbjct 3061136 GGTGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGCTATTTGTACCCGTCACC 3061077 Query 162304 GGTCTCTGGACAAGTTCTATCGGTATTATTGGACTCGCTCTTAATCTTCGTGCTTACGAC 162363 ||| | |||| ||| |||| || | |||| || ||||| || || ||||| || ||| Sbjct 3061076 GGTTTATGGATGAGTGCTATTGGCGTAGTTGGCCTGGCTCTGAACCTACGTGCCTATGAC 3061017 Query 162364 TTTGTATCTCAGGAGATTCGTGCAGCGGAGGATCCTGAATTTGAAACCTTCTACACCAAG 162423 || || || ||||| || ||||||||||| |||||||||||||| || ||||||||||| Sbjct 3061016 TTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACCAAA 3060957 Query 162424 AATATCCTCTTGAATGAAGGTCTTCGTGCATGGTTGGCACCAGTTGATCAACCGCATGAG 162483 ||||| || || || || ||| ||||||| ||| ||||| | ||||| || ||||| Sbjct 3060956 AATATTCTTTTAAACGAGGGTATTCGTGCGTGGATGGCAGCTCAGGATCAGCCTCATGAA 3060897 Query 162484 AACTTTGTATTCCCTGAGGAAGTTCTGCCTAGAGGTAACGCACTGTGAATGG 162535 || || ||||||||||||| ||||| || | || ||||| || | ||||| Sbjct 3060896 AATCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT-TTAATGG 3060846 >seq72 Length=1231634 Score = 165 bits (182), Expect = 9e-36 Identities = 206/280 (74%), Gaps = 2/280 (1%) Strand=Plus/Plus Query 161765 AAGGGGATTTCGTCAGGTGGATCCAACTTGGGGGACTCTGGAATTTTGTGGCGCTCCACG 161824 |||||||||| | ||| |||| | ||||| || |||| |||||| || ||||| | Sbjct 291129 AAGGGGATTTTACTCGTTGGTGCCAATTAGGGGGTCTGTGGACTTTTGTCGCTCTCCATG 291188 Query 161825 GGGCTTTCGCTCTGATTGGATTCATGCTTCGTCAGTTTGAACTTGCTCG-TCTTATCGGT 161883 ||||||| || || || || |||||| | ||||| |||||||||||| | ||| || | Sbjct 291189 GGGCTTTTGCACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTAGGTCTGTTCAAT 291248 Query 161884 ATCCGTCCTTACAATGCTATTGCTTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTT 161943 | || ||||| ||||| ||| | |||| |||||| || ||||||||||| ||| || Sbjct 291249 -TGCGGCCTTATAATGCAATTTCATTCTTTGGTCCAATCGCTGTTTTTGTTTCCGTATTC 291307 Query 161944 CTCATATATCCTCTGGGACAGTCGTCCTGGTTCTTCGCGCCATCGTTTGGGGTTGCCGCT 162003 || || ||||| |||||||| || |||||||| || || | ||| || || ||| Sbjct 291308 CTTATTTATCCACTGGGACAATCTGGTTGGTTCTTTGCACCGAGTTCTGGCGTAGCAGCT 291367 Query 162004 ATTTTCAGGTTCTTACTTTTCCTACAAGGTTTCCACAATT 162043 || || | ||| | |||||| | ||||| || || |||| Sbjct 291368 ATATTTTGATTCATCCTTTTCTTCCAAGGATTTCATAATT 291407 >seq28 Length=2533697 Score = 84.2 bits (92), Expect = 2e-11 Identities = 151/220 (69%), Gaps = 12/220 (5%) Strand=Plus/Plus Query 161695 ACAGCGGCAGTTAGCACTCCAGCTGACGCTATGGGTCATTCTCTTCTTCTTCTCTGGGGT 161754 |||||||||||| || || ||||| | | | || ||| | | | || ||||| Sbjct 2401559 ACAGCGGCAGTTTCCATCCCTGCTGATAGTTTAGCACACTCTTTGTTGCCACTATGGGGA 2401618 Query 161755 CCTGAGGCTCAAGGGGATTTCGTCAGGTGGATCCAACTTGGGGGACTCTGGAATTTTGTG 161814 || || || ||||||||||| | ||| ||| | ||||| ||||| Sbjct 2401619 CCGGAAGCACAAGGGGATTTTACTCGTTGGTGTCAATTAGGGGG----------TTTGTC 2401668 Query 161815 GCGCTCCACGGGGCTTTCGCTCTGATTGGATTCATGCTTCGTCAGTTTGAACTTGCTC-G 161873 || |||| |||||||| || || || || |||||| | ||||| ||||||||||||| | Sbjct 2401669 GCTTTCCATGGGGCTTTTGCACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCAG 2401728 Query 161874 TCTTATCGGTATCCGTCCTTACAATGCTATTGCTTTCTCT 161913 ||| || | | || ||||| ||||| ||| | |||||| Sbjct 2401729 TCTGTTCAAT-TGCGGCCTTATAATGCAATTTCATTCTCT 2401767 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 551371692375000