Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oropetium_20thomaeum_20[genbank_20GCA_5F001182835.1_202015-07-20] 625 sequences; 243,174,629 total letters Query= NC_031906.1 Length=198190 Score E Sequences producing significant alignments: (Bits) Value seq15 572 2e-158 seq72 170 2e-37 >seq15 Length=3529114 Score = 572 bits (634), Expect = 2e-158 Identities = 737/1014 (73%), Gaps = 2/1014 (0%) Strand=Plus/Minus Query 189987 TTTGACATCCTTGATGACTGGCTTAAACGAGATCGCTTTGTCTTTGTGGGTTGGTCTGGA 190046 ||||| || | || |||||| | | | || || || || ||||| || ||||| || Sbjct 3061865 TTTGATATTATGGACGACTGGTTACGAAGGGACCGTTTCGTTTTTGTAGGATGGTCCGGC 3061806 Query 190047 TTACTTCTTTTTCCCACTGCTTATCTCGCAATTGGTGGCTGGCTTACTGGCACGACGTTT 190106 || | || ||||| ||||||| |||| | || || ||| |||| || || || ||| Sbjct 3061805 CTATTGCTCTTTCCTTGTGCTTATTTCGCTTTAGGGGGTTGGTTTACAGGGACTACTTTT 3061746 Query 190107 GCTACAAGCTGGTACACCCACGGACTCGCAAGTAGTTACCTTGAGGGTGCTAATTTTCTT 190166 | || ||||| ||||| ||| | || ||| || | || ||| ||||| | Sbjct 3061745 GTAACTTCTTGGTATACCCATGGATTGGCTAGTTCCTATTTGGAAGGTTGCAATTTCTTA 3061686 Query 190167 ACAGCGGCTGTGTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGT 190226 || ||||| || || || |||||| || | | | || ||| | | ||||| ||||| Sbjct 3061685 ACGGCGGCAGTTTCCACCCCTGCTAATAGTTTAGCACACTCTTTGTTGCTACTATGGGGA 3061626 Query 190227 CCTGAATCTCAAGGCGATTTCGTCAGGTGGATCCAACTTGGGGGACTCTGGGCTTTTGTG 190286 || ||| | ||||| ||||| | ||| |||| | ||||| || ||| ||||||| Sbjct 3061625 CCGGAAGCACAAGGGGATTTTACTCGTTGGTGCCAATTAGGGGGTCTGTGGACTTTTGTC 3061566 Query 190287 GCGCTCCACGGGGCTTTCGCTCTAATTGGATTCATGCTTCGTCAGTTTGAACTGGC-ACG 190345 || ||||| |||||||| || ||||| || |||||| | ||||| |||||||| || | | Sbjct 3061565 GCTCTCCATGGGGCTTTTGCACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTAGG 3061506 Query 190346 TCTCATCGGTATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTTTGT 190405 ||| || | | || ||||| ||||| ||| | ||||||||||| |||||||||||||| Sbjct 3061505 TCTGTTCAAT-TGCGGCCTTATAATGCAATTTCATTCTCTGGTCCAATCGCTGTTTTTGT 3061447 Query 190406 TAGCGTCTTTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTCTTCGCGCCATCCTTCGG 190465 | ||| || || || || || ||||| ||||| |||||||||| || || || || Sbjct 3061446 TTCCGTATTCCTTATTTATCCACTGGGACAATCTGGTTGGTTCTTTGCACCGAGTTTTGG 3061387 Query 190466 TGTGGCAGCGATCTTCCGCTTCCTCCTCTTCTTGCAGGGCTTCCATAACTGGACGCTGAA 190525 || ||||| || || || ||| |||| ||||| || || || ||||| |||||| |||| Sbjct 3061386 CGTAGCAGCTATATTTCGATTCATCCTTTTCTTCCAAGGATTTCATAATTGGACGTTGAA 3061327 Query 190526 CCCCTTCCACATGATGGGTGTTGCAGGTATCCTGGGAGGAGCACTACTGTCAGCAATCCA 190585 |||||| || |||||||| ||||| || | | || | ||| || || | || || || Sbjct 3061326 CCCCTTTCATATGATGGGAGTTGCCGGAGTATTAGGTGCAGCTCTCCTATGCGCTATTCA 3061267 Query 190586 TGGTGTGACTGTAGAGAATACTTTGTATGAAGATGGTGAACAAGCAAACACGTTTAAAGC 190645 ||| | |||||||| || ||| | | ||||||||||| ||||| || || ||| Sbjct 3061266 TGGGGCTACTGTAGAAAACACTCTATTCGAAGATGGTGATGGTGCAAATACCTTCCGAGC 3061207 Query 190646 ATTCGACTCTACACAAGAGGAAGAGACCTATTCGATGGTCACTGCCAACCGTTTCTGGTC 190705 || || | || |||| |||||| || ||||| |||||||| || ||||| || ||||| Sbjct 3061206 TTTTAACCCCACTCAAGCGGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTC 3061147 Query 190706 TCAAATCTTTGGTGTTGCGTTCAGTAATAAGAGGTGGTTGCATTTCTTTATGCTCTTTGT 190765 ||||||||||||||||| || ||||| | ||||| |||||||||||||| ||||| Sbjct 3061146 CCAAATCTTTGGTGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGCTATTTGT 3061087 Query 190766 TCCTGTTATGGGTCTGTGGACTTCTTCCATCGGTATTATTGGTCTTGCTCTCAACCTTCG 190825 || || | ||| | |||| | | || || | |||| || ||||| ||||| || Sbjct 3061086 ACCCGTCACCGGTTTATGGATGAGTGCTATTGGCGTAGTTGGCCTGGCTCTGAACCTACG 3061027 Query 190826 TGCTTATGACTTTGTATCCCAAGAGATCAGAGCAGCAGAAGATCCAGAGTTCGAGACTTT 190885 ||| |||||||| || ||||| || ||| | ||||| |||||||| || || |||||||| Sbjct 3061026 TGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTT 3060967 Query 190886 TTACACAAAAAATATACTTTTGAATGAAGGTCTTCGTTCATGGTTGGCACCTGTTGATCA 190945 ||||| |||||||| ||||| || || ||| ||||| | ||| ||||| || ||||| Sbjct 3060966 CTACACCAAAAATATTCTTTTAAACGAGGGTATTCGTGCGTGGATGGCAGCTCAGGATCA 3060907 Query 190946 ACCCCATGAGAATTTTGTATTTCCAGAAGAAGTATTGCCAAGAGGCAACGCTCT 190999 || ||||| ||| || |||| || || || || | ||| | || |||||||| Sbjct 3060906 GCCTCATGAAAATCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 3060853 >seq72 Length=1231634 Score = 170 bits (188), Expect = 2e-37 Identities = 193/256 (75%), Gaps = 2/256 (1%) Strand=Plus/Plus Query 190259 CCAACTTGGGGGACTCTGGGCTTTTGTGGCGCTCCACGGGGCTTTCGCTCTAATTGGATT 190318 |||| | ||||| || ||| ||||||| || ||||| |||||||| || ||||| || || Sbjct 291151 CCAATTAGGGGGTCTGTGGACTTTTGTCGCTCTCCATGGGGCTTTTGCACTAATAGGTTT 291210 Query 190319 CATGCTTCGTCAGTTTGAACTGGC-ACGTCTCATCGGTATCCGTCCTTACAATGCTATTG 190377 |||| | ||||| |||||||| || | |||| || | | || ||||| ||||| ||| Sbjct 291211 CATGTTACGTCAATTTGAACTTGCTAGGTCTGTTCAAT-TGCGGCCTTATAATGCAATTT 291269 Query 190378 CGTTCTCTGGTCCTATCGCTGTTTTTGTTAGCGTCTTTCTCATCTACCCTCTGGGTCAAT 190437 | |||| |||||| ||||||||||||||| ||| || || || || || ||||| |||| Sbjct 291270 CATTCTTTGGTCCAATCGCTGTTTTTGTTTCCGTATTCCTTATTTATCCACTGGGACAAT 291329 Query 190438 CGAGTTGGTTCTTCGCGCCATCCTTCGGTGTGGCAGCGATCTTCCGCTTCCTCCTCTTCT 190497 | |||||||||| || || | || || ||||| || || | ||| |||| |||| Sbjct 291330 CTGGTTGGTTCTTTGCACCGAGTTCTGGCGTAGCAGCTATATTTTGATTCATCCTTTTCT 291389 Query 190498 TGCAGGGCTTCCATAA 190513 | || || || ||||| Sbjct 291390 TCCAAGGATTTCATAA 291405 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 634075046250000