Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oropetium_20thomaeum_20[genbank_20GCA_5F001182835.1_202015-07-20] 625 sequences; 243,174,629 total letters Query= NC_031922.1 Length=174830 Score E Sequences producing significant alignments: (Bits) Value seq15 558 4e-154 seq72 161 1e-34 >seq15 Length=3529114 Score = 558 bits (618), Expect = 4e-154 Identities = 735/1012 (73%), Gaps = 10/1012 (1%) Strand=Plus/Minus Query 163897 TGGACGACTGGCTTAAACGAGATCGCTTTGTCTTTGTGGGTTGGTCTGGATTACTTCTTT 163956 ||||||||||| | | | || || || || ||||| || ||||| || || | || | Sbjct 3061855 TGGACGACTGGTTACGAAGGGACCGTTTCGTTTTTGTAGGATGGTCCGGCCTATTGCTCT 3061796 Query 163957 TTCCCACTGCTTATCTTGCAATTGGTGGCTGGCTTACTGGTACAACGTTTGTTACCAGTT 164016 |||| ||||||| | || | || || ||| |||| || || || ||||| || || Sbjct 3061795 TTCCTTGTGCTTATTTCGCTTTAGGGGGTTGGTTTACAGGGACTACTTTTGTAACTTCTT 3061736 Query 164017 GGTACACCCACGGTCTCGCGTCTAGTTACC--TTG--AGGGTGCTAATTTCCTTACAGCG 164072 |||| ||||| || | || ||||| | ||| ||| ||| |||||| | || ||| Sbjct 3061735 GGTATACCCATGGATTGGC---TAGTTCCTATTTGGAAGGTTGC-AATTTCTTAACGGCG 3061680 Query 164073 GCTGTGTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAG 164132 || || || || |||||| || | | | || ||| | | ||||| ||||| || || Sbjct 3061679 GCAGTTTCCACCCCTGCTAATAGTTTAGCACACTCTTTGTTGCTACTATGGGGACCGGAA 3061620 Query 164133 TCTCAGGGGGACTTCATTAGGTGGTGCCAACTTGGGGGACTCTGGGCTTTTGTGGCGTTC 164192 | || ||||| || | | | ||||||||| | ||||| || ||| ||||||| || || Sbjct 3061619 GCACAAGGGGATTTTACTCGTTGGTGCCAATTAGGGGGTCTGTGGACTTTTGTCGCTCTC 3061560 Query 164193 CACGGATCTTTCGCTCTGATCGGTTTCATGCTTCGGCAGTTTGAAATTGC-ACGTCTTGT 164251 || || |||| || || || ||||||||| | || || |||||| |||| | |||| | Sbjct 3061559 CATGGGGCTTTTGCACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTAGGTCTGTT 3061500 Query 164252 AGGTATCCGTCCGTACAATGCTATTGCGTTCTCTGGTCCGATTGCTGTCTTTGTCAGCGT 164311 | | || || || ||||| ||| | ||||||||||| || ||||| ||||| ||| Sbjct 3061499 CAAT-TGCGGCCTTATAATGCAATTTCATTCTCTGGTCCAATCGCTGTTTTTGTTTCCGT 3061441 Query 164312 TTTCCTTATGTACCCTCTCGGGCAATCTAGTTGGTTCTTTGCCCCCTCGTTTGGGGTCGC 164371 |||||||| || || || || |||||| ||||||||||||| || ||||| || || Sbjct 3061440 ATTCCTTATTTATCCACTGGGACAATCTGGTTGGTTCTTTGCACCGAGTTTTGGCGTAGC 3061381 Query 164372 GGCGATCTTCAGATTCCTCTTGTTCCTCCAAGGTTTCCATAACTGGACACTCAACCCCTT 164431 || || || ||||| || | ||| ||||||| || ||||| ||||| | |||||||| Sbjct 3061380 AGCTATATTTCGATTCATCCTTTTCTTCCAAGGATTTCATAATTGGACGTTGAACCCCTT 3061321 Query 164432 CCATATGATGGGTGTTGCAGGCATCCTTGGTGGTGCTCTTCTCTGTGCTATTCATGGTGC 164491 ||||||||||| ||||| || | | |||| ||||| || || ||||||||||| || Sbjct 3061320 TCATATGATGGGAGTTGCCGGAGTATTAGGTGCAGCTCTCCTATGCGCTATTCATGGGGC 3061261 Query 164492 TACCGTAGAGAATACTTTGTTTGAAGATGGTGAACAATCAAATACTTTCAAGGCATTCGA 164551 ||| ||||| || ||| | || ||||||||||| ||||||| ||| || || | Sbjct 3061260 TACTGTAGAAAACACTCTATTCGAAGATGGTGATGGTGCAAATACCTTCCGAGCTTTTAA 3061201 Query 164552 GCCTACTCAAGAGGAAGAGACTTACTCGATGGTCACTGCCAACCGCTTCTGGTCTCAGAT 164611 || ||||||| |||||| ||||| || |||||||| || |||||||| ||||| || || Sbjct 3061200 CCCCACTCAAGCGGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCCCAAAT 3061141 Query 164612 TTTTGGTATTGCTTTCAGCAATAAGCGTTGGTTGCACTTCTTTATGCTCTTTGTTCCTGT 164671 |||||| ||||||| |||||| |||||||| || ||||||||||| ||||| || || Sbjct 3061140 CTTTGGTGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGCTATTTGTACCCGT 3061081 Query 164672 CATGGGACTTTGGACAAGTTCTATTGGTATCATCGGTCTCGCACTCAATCTTCGTGCTTA 164731 || || | |||| ||| ||||||| | | || || || || || || ||||| || Sbjct 3061080 CACCGGTTTATGGATGAGTGCTATTGGCGTAGTTGGCCTGGCTCTGAACCTACGTGCCTA 3061021 Query 164732 TGATTTTGTGTCTCAGGAGATTAGAGCAGCAGAGGATCCTGAATTTGAGACGTTCTATAC 164791 ||| || || || ||||| || | ||||| || ||||||||||||||||| ||||| || Sbjct 3061020 TGACTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTTCTACAC 3060961 Query 164792 GAAGAACATCCTCCTCAATGAAGGACTCCGTGCCTGGATGGCTCCAGTAGACCAGCCACA 164851 || || || || | || || || | ||||| |||||||| | || ||||| || Sbjct 3060960 CAAAAATATTCTTTTAAACGAGGGTATTCGTGCGTGGATGGCAGCTCAGGATCAGCCTCA 3060901 Query 164852 CGAATCGTTTGTATTTCCAGAGGAAGTTCTTCCGAGAGGTAACGCACTCTAA 164903 ||| || |||| || ||||| ||||| || | || ||||| || ||| Sbjct 3060900 TGAAAATCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCTTTAA 3060849 >seq72 Length=1231634 Score = 161 bits (178), Expect = 1e-34 Identities = 203/276 (74%), Gaps = 2/276 (1%) Strand=Plus/Plus Query 164139 GGGGACTTCATTAGGTGGTGCCAACTTGGGGGACTCTGGGCTTTTGTGGCGTTCCACGGA 164198 ||||| || | | | ||||||||| | ||||| || ||| ||||||| || |||| || Sbjct 291131 GGGGATTTTACTCGTTGGTGCCAATTAGGGGGTCTGTGGACTTTTGTCGCTCTCCATGGG 291190 Query 164199 TCTTTCGCTCTGATCGGTTTCATGCTTCGGCAGTTTGAAATTGC-ACGTCTTGTAGGTAT 164257 |||| || || || ||||||||| | || || |||||| |||| | |||| | | | Sbjct 291191 GCTTTTGCACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTAGGTCTGTTCAAT-T 291249 Query 164258 CCGTCCGTACAATGCTATTGCGTTCTCTGGTCCGATTGCTGTCTTTGTCAGCGTTTTCCT 164317 || || || ||||| ||| | |||| |||||| || ||||| ||||| ||| ||||| Sbjct 291250 GCGGCCTTATAATGCAATTTCATTCTTTGGTCCAATCGCTGTTTTTGTTTCCGTATTCCT 291309 Query 164318 TATGTACCCTCTCGGGCAATCTAGTTGGTTCTTTGCCCCCTCGTTTGGGGTCGCGGCGAT 164377 ||| || || || || |||||| ||||||||||||| || | ||| || || || || Sbjct 291310 TATTTATCCACTGGGACAATCTGGTTGGTTCTTTGCACCGAGTTCTGGCGTAGCAGCTAT 291369 Query 164378 CTTCAGATTCCTCTTGTTCCTCCAAGGTTTCCATAA 164413 || ||||| || | ||| ||||||| || ||||| Sbjct 291370 ATTTTGATTCATCCTTTTCTTCCAAGGATTTCATAA 291405 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 559323630250000