Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20barthii_20[genbank_20GCA_5F000182155.3_202014-05-08] 12 sequences; 308,272,304 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq7 152 2e-34 seq6 150 7e-34 >seq7 Length=24128185 Score = 152 bits (168), Expect = 2e-34 Identities = 198/270 (73%), Gaps = 3/270 (1%) Strand=Plus/Minus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTG-TCA 463 || ||||||||| || |||||||||||||||| |||| ||| ||| |||| | | Sbjct 9738593 CGACCCGTCTTGAAATACGGACCAAGGAGTCTGACATGCGTGCAAGTCAACGGGTTCTGA 9738534 Query 464 AACCCGTGC-GCGTAATGAAAGTGAACGGAGGTGGGAACCCGTGAGGGTGCACCATCGAC 522 |||| | | | | || ||| ||| | || || | || | || ||||| | | Sbjct 9738533 AACCTGGGATGTGCAAGGAAGCTGACGAGCGGGAGGCCCTCGCG-GGCCGCACCGCTGGC 9738475 Query 523 CGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATG 582 | | |||||| | | || || || |||| ||||| || | ||||||||||||||| Sbjct 9738474 CAACCCTGATCTTCTGTGAAGGGTTCGAGTTGGAGCACGCCTATCGGGACCCGAAAGATG 9738415 Query 583 GTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTT 642 | ||||||||||||| || |||||||||||||||||||||||||||||| |||| | Sbjct 9738414 GCGAACTATGCCTGAGCGCGGCGAAGCCAGAGGAAACTCTGGTGGAGGCTCGAAGCGATA 9738355 Query 643 CTGGCGTGCAAATCGATCGTCAAATTTGGG 672 ||| ||||||||||| ||||| | ||||| Sbjct 9738354 CTGACGTGCAAATCGTTCGTCTGACTTGGG 9738325 >seq6 Length=25711811 Score = 150 bits (166), Expect = 7e-34 Identities = 210/285 (74%), Gaps = 11/285 (4%) Strand=Plus/Minus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTG-TCA 463 || ||||||||| ||||||||||||||||||| |||| | |||| |||| | Sbjct 7582023 CGACCCGTCTTGAAACACGGACCAAGGAGTCTGACATGCCTACGAGACGACGGGTTCTGG 7581964 Query 464 AACCCGTGC-GCGTAATGAAAGTGAACGGAGGTGGGAACCCGT-GAGGGT-GCACCATCG 520 |||| | | | | || ||| ||| ||| || || || | | ||| ||||| || Sbjct 7581963 AACCTGGGATGTGCAAGGAAGCTGAC--GAG-TGAGAGGCCCTCGCGGGCCGCACCGCCG 7581907 Query 521 ACCGATCCTGATGTCTTCGG--ATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAA 578 |||| ||| || |||| | | || ||||||| ||||| |||| |||||||||| Sbjct 7581906 GCCGACCCTAAT--CTTCTGTAAAGGGTTTGAGTTGGAGCACGCCTGTCGGGACCCGAAC 7581849 Query 579 GATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGC 638 |||||| ||||| |||||| || ||||||| |||||||||||||||||||||| ||| Sbjct 7581848 GATGGTCAACTAAGCCTGAGCGAGGCGAAGCCAAAGGAAACTCTGGTGGAGGCTCGAAGC 7581789 Query 639 GGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 | | ||| |||||||||| | ||| | |||||||||||| ||| Sbjct 7581788 GATACTGACGTGCAAATCATTTGTCTGACTTGGGTATAGGGCCGA 7581744 Score = 114 bits (126), Expect = 5e-23 Identities = 192/272 (71%), Gaps = 8/272 (3%) Strand=Plus/Plus Query 412 TCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTC-AAACCCG- 469 ||||| ||||||||||| ||||||| |||| |||||||| |||| | ||||| | Sbjct 7581157 TCTTGAAACACGGACCACGGAGTCTGACATGCATGCGAGTCGACGGGTTTTGAAACCTGG 7581216 Query 470 --TGCGCGTAATGAAAGTGAACGGAGGTGGGAACCCGTGAGGGTGCACCATCGACCGATC 527 | ||| || ||| ||| | || || | || | || ||| | ||| | Sbjct 7581217 AATACGC--AAGGAATCTGACAAGTGGCAGGCCCTCGCG-GGCCATACCTCTGGCCGC-C 7581272 Query 528 CTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAA 587 ||||| | | || || || || | ||||| ||| |||||||||||||||||||| Sbjct 7581273 CTGATCTTCTGTGAAGGGTTCGAATTGGAGCACGCATGTCGGGACCCGAAAGATGGTGAA 7581332 Query 588 CTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGC 647 ||||| ||| ||| ||| ||||||||| ||| |||||||||| |||| | ||| | Sbjct 7581333 TTATGCTTGAGCGGGGCGAAATCAGAGGAAAATCTAATGGAGGCTCGAAGCGATACTGAC 7581392 Query 648 GTGCAAATCGATCGTCAAATTTGGGTATAGGG 679 || ||||||| | ||| | |||||||||||| Sbjct 7581393 GTACAAATCGTTTGTCTGACTTGGGTATAGGG 7581424 Score = 98.7 bits (108), Expect = 4e-18 Identities = 118/159 (74%), Gaps = 1/159 (1%) Strand=Plus/Plus Query 25 TGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTT 84 ||| || || || ||||| | |||||||||||||||| | || ||| |||||| | Sbjct 7580778 TGAGGCGCCGTCAACGAGATTGGATGTTTGGGAATGCAGCCCAAATCGGGCGGTAAACTC 7580837 Query 85 CTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATG 144 | || || |||||||| | | ||||| ||||||| ||||| | || |||||||| Sbjct 7580838 CGTCCAAGGCTAAATACAG-CGAGAGATCGATAGCAAACAAGCACCACGAGGGAAAGATG 7580896 Query 145 AAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAAT 183 |||| || ||| ||||||||| |||||| | |||||| Sbjct 7580897 AAAATGACATTGAAAAGAGAGTCAAAAAGTGCTTGAAAT 7580935 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079999742600