Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20barthii_20[genbank_20GCA_5F000182155.3_202014-05-08] 12 sequences; 308,272,304 total letters Query= AAMG01000383.1 Length=435 Score E Sequences producing significant alignments: (Bits) Value seq3 141 2e-31 seq11 125 2e-26 seq2 118 3e-24 >seq3 Length=33311619 Score = 141 bits (156), Expect = 2e-31 Identities = 134/171 (78%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 167 ACTAGAGTGTGTCAGAGGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGT 226 ||| ||||| | ||||| | |||||||| | |||||| ||||||| ||||||| | Sbjct 21812142 ACTTGAGTGAGATAGAGGAGAGTGGAATTTCGTGTGTAGGGGTGAAATCCGTAGATCTAC 21812201 Query 227 GGAGGAACACCAATGGCGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAG 286 | |||||| |||| ||||||||||| | ||||| || |||||| | |||||| Sbjct 21812202 GAAGGAACGCCAAAAGCGAAGGCAGCTCTCTGGGTCCCTACCGACGCTGGGGTGCGAAAG 21812261 Query 287 CGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCCTAAACGAT 337 | |||||||| ||||||||||||||||||||||||||| ||| |||| ||| Sbjct 21812262 CATGGGGAGCGAACAGGATTAGATACCCTGGTAGTCCATGCCATAAATGAT 21812312 Score = 93.3 bits (102), Expect = 1e-16 Identities = 80/99 (81%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 8 GAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCG 67 || ||| |||| |||||||||| |||||||||||||||||||| || ||| ||||| | Sbjct 21811871 GAGGAAGAAGCCCCGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACAGGGGGGGCAAGTG 21811930 Query 68 TTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGT 106 || ||||||| ||| | ||||||| | || ||||||| Sbjct 21811931 TTCTTCGGAATGACTAGTCGTAAAGGGCACGTAGGCGGT 21811969 >seq11 Length=23014695 Score = 125 bits (138), Expect = 2e-26 Identities = 111/139 (80%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62 || |||| ||||||||| ||||||||| ||||||||||||||||||| || ||| ||| Sbjct 9335672 TATCTGAGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAAGACAGAGGATGC 9335731 Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGT 122 |||||||| |||||| | |||||||||||||| | ||| || | | ||| | | || Sbjct 9335732 AAGCGTTATCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTCAAGTCCGCCGT 9335791 Query 123 GAAATCCCCGGGCTTAACC 141 ||||||| ||||| |||| Sbjct 9335792 CAAATCCCAGGGCTCAACC 9335810 >seq2 Length=31686972 Score = 118 bits (130), Expect = 3e-24 Identities = 104/130 (80%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 208 GTGAAATGCGTAGATATGTGGAGGAACACCAATGGCGAAGGCAGCCCCCTGGGATAACAC 267 ||||||| ||||||| | | |||||| |||| ||||||| ||| | ||||| || Sbjct 1123197 GTGAAATCCGTAGATCTACGAAGGAACGCCAAAAGCGAAGGTAGCTCTCTGGGTCCCTAC 1123256 Query 268 TGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGC 327 |||||| | ||||||| |||||||| ||||||||||||||||||||||||||| || Sbjct 1123257 CGACGCTGGGGTGCGAAAGCATGGGGAGCGAACAGGATTAGATACCCTGGTAGTCCATGC 1123316 Query 328 CCTAAACGAT 337 | |||||||| Sbjct 1123317 CGTAAACGAT 1123326 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1289599845248