Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20barthii_20[genbank_20GCA_5F000182155.3_202014-05-08] 12 sequences; 308,272,304 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq7 86.0 9e-15 seq2 84.2 3e-14 >seq7 Length=24128185 Score = 86.0 bits (94), Expect = 9e-15 Identities = 72/87 (83%), Gaps = 1/87 (1%) Strand=Plus/Minus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 ||||||| ||||||||||| ||||| | ||||||||| ||||| ||| ||| | || Sbjct 19982014 CCTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACC-ACTTAGCAGAGTCC 19981956 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCC 92 |||||||||| |||||||||||| ||| Sbjct 19981955 TGTGTTTTTAATAAACAGTCGCTACCC 19981929 Score = 73.4 bits (80), Expect = 5e-11 Identities = 71/90 (79%), Gaps = 1/90 (1%) Strand=Plus/Minus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 ||||||| ||||||||||| || || | ||||||||| ||||| ||| ||| || Sbjct 3056723 CCTTCCAGCACCGGGCAGGTGTTAGACTCTATACATCGTGTTACC-ACTTAGCAGAATCC 3056665 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCT 95 |||||||||| |||| ||||||| ||| || Sbjct 3056664 TGTGTTTTTAATAAATAGTCGCTACCCCCT 3056635 >seq2 Length=31686972 Score = 84.2 bits (92), Expect = 3e-14 Identities = 69/83 (83%), Gaps = 1/83 (1%) Strand=Plus/Minus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 ||||||| ||||||||||| ||||| | ||||||||| ||||| ||| ||| | || Sbjct 22634355 CCTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACC-ACTTAGCAGAGTCC 22634297 Query 66 TGTGTTTTTAGTAAACAGTCGCT 88 |||||||||| |||||||||||| Sbjct 22634296 TGTGTTTTTAATAAACAGTCGCT 22634274 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694399919276