Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20barthii_20[genbank_20GCA_5F000182155.3_202014-05-08] 12 sequences; 308,272,304 total letters Query= AAMG01000599.1 Length=180 Score E Sequences producing significant alignments: (Bits) Value seq7 86.0 6e-15 seq2 86.0 6e-15 >seq7 Length=24128185 Score = 86.0 bits (94), Expect = 6e-15 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 68 GCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTGTGA 127 ||||||||||||||||||||||| ||||||| || | || || |||||| || ||| Sbjct 19981934 GCGACTGTTTATTAAAAACACAGGACTCTGCTAAGTGGTAACACGATGTATAGAGTCTGA 19981993 Query 128 CGCCTGCCCGGTGCCGGAAGGT 149 | |||||||||||| ||||||| Sbjct 19981994 CACCTGCCCGGTGCTGGAAGGT 19982015 Score = 77.0 bits (84), Expect = 3e-12 Identities = 74/95 (78%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 55 ATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGAC 114 |||||||| | |||||| |||||||||||||||| | ||||| || | || || Sbjct 3056630 ATACCAGGGGGTAGCGACTATTTATTAAAAACACAGGATTCTGCTAAGTGGTAACACGAT 3056689 Query 115 GTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGT 149 |||||| || | || |||||||||||| ||||||| Sbjct 3056690 GTATAGAGTCTAACACCTGCCCGGTGCTGGAAGGT 3056724 >seq2 Length=31686972 Score = 86.0 bits (94), Expect = 6e-15 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 55 ATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGAC 114 |||||||| ||||||||||||||||||||||| ||||||| || | || || Sbjct 22634262 ATACCAGGGGTTAGCGACTGTTTATTAAAAACACAGGACTCTGCTAAGTGGTAACACGAT 22634321 Query 115 GTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGT 149 |||||| || |||| |||||||||||| ||||||| Sbjct 22634322 GTATAGAGTCTGACACCTGCCCGGTGCTGGAAGGT 22634356 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476799944572