Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20barthii_20[genbank_20GCA_5F000182155.3_202014-05-08] 12 sequences; 308,272,304 total letters Query= AAMG01000636.1 Length=426 Score E Sequences producing significant alignments: (Bits) Value seq3 190 5e-46 seq5 163 7e-38 seq6 89.7 1e-15 seq7 86.0 2e-14 seq2 86.0 2e-14 >seq3 Length=33311619 Score = 190 bits (210), Expect = 5e-46 Identities = 134/153 (88%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 |||||||||||| || || ||||||| ||||||| ||||||| ||| |||||| Sbjct 25165610 GCATCTTCACAGACATGTCTATTTCACCGAGTCTCTCTCCGAGACAGTGCCCAGATCGTT 25165551 Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132 ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 25165550 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 25165491 Query 133 TTGTTACGGCCGCCGTTTACCGGGGCTTCGATC 165 | ||||||||||||||| |||||||||||| || Sbjct 25165490 TAGTTACGGCCGCCGTTCACCGGGGCTTCGGTC 25165458 >seq5 Length=24206129 Score = 163 bits (180), Expect = 7e-38 Identities = 104/113 (92%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 53 GAGACAGCGCCGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATT 112 ||||||| ||| ||||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 20767928 GAGACAGTGCCCAGATCGTTACGCCTTTCGTGCAGGTCGGAACTTACTCGACAAGGAATT 20767869 Query 113 TCGCTACCTTAGGACCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATC 165 ||||||||||||||||||||| ||||||||||||||| |||||||||||| || Sbjct 20767868 TCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTCACCGGGGCTTCGGTC 20767816 >seq6 Length=25711811 Score = 89.7 bits (98), Expect = 1e-15 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 53 GAGACAGCGCCGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATT 112 |||| || ||| |||||||| || || ||| |||| ||||||||||||||||||||| Sbjct 14856439 GAGATAGAGCCCAAATCGTTACACCTTTTGTGTGGGTCAGAACTTACCCGACAAGGAATT 14856380 Query 113 TCGCTACCTTAGGACCG 129 ||||||||||||||||| Sbjct 14856379 TCGCTACCTTAGGACCG 14856363 >seq7 Length=24128185 Score = 86.0 bits (94), Expect = 2e-14 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 198 ACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGCAGAGTGC 257 ||||||| |||||||||||| |||| || |||||| || || | || ||||||| | Sbjct 19982015 ACCTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCACTTAGCAGAGTCC 19981956 Query 258 TGTGTTTTTAATAAACAGTCGC 279 |||||||||||||||||||||| Sbjct 19981955 TGTGTTTTTAATAAACAGTCGC 19981934 Score = 77.0 bits (84), Expect = 8e-12 Identities = 74/95 (78%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 198 ACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGCAGAGTGC 257 ||||||| |||||||||||| || | || |||||| || || | || ||||| | | Sbjct 3056724 ACCTTCCAGCACCGGGCAGGTGTTAGACTCTATACATCGTGTTACCACTTAGCAGAATCC 3056665 Query 258 TGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTAT 292 ||||||||||||||| |||||| | |||||||| Sbjct 3056664 TGTGTTTTTAATAAATAGTCGCTACCCCCTGGTAT 3056630 >seq2 Length=31686972 Score = 86.0 bits (94), Expect = 2e-14 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 198 ACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGCAGAGTGC 257 ||||||| |||||||||||| |||| || |||||| || || | || ||||||| | Sbjct 22634356 ACCTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCACTTAGCAGAGTCC 22634297 Query 258 TGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTAT 292 |||||||||||||||||||||| |||||||| Sbjct 22634296 TGTGTTTTTAATAAACAGTCGCTAACCCCTGGTAT 22634262 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1260799848704