Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20barthii_20[genbank_20GCA_5F000182155.3_202014-05-08] 12 sequences; 308,272,304 total letters Query= AAMG01000753.1 Length=364 Score E Sequences producing significant alignments: (Bits) Value seq3 205 2e-50 seq5 174 3e-41 seq6 123 5e-26 seq7 100 6e-19 seq2 100 6e-19 seq10 78.8 2e-12 >seq3 Length=33311619 Score = 205 bits (226), Expect = 2e-50 Identities = 134/148 (91%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 |||||||||| | || | |||||||||||||| | ||||||||||||| |||||| Sbjct 25165610 GCATCTTCACAGACATGTCTATTTCACCGAGTCTCTCTCCGAGACAGTGCCCAGATCGTT 25165551 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 25165550 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 25165491 Query 127 TAGTTACGGCCGCCGTTTACTGGGGCTT 154 ||||||||||||||||| || ||||||| Sbjct 25165490 TAGTTACGGCCGCCGTTCACCGGGGCTT 25165463 >seq5 Length=24206129 Score = 174 bits (192), Expect = 3e-41 Identities = 104/109 (95%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 46 TGAGACAGTGCCCAAATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAAT 105 |||||||||||||| ||||||||||||||||||| ||||||||||||| ||||||||||| Sbjct 20767929 TGAGACAGTGCCCAGATCGTTACGCCTTTCGTGCAGGTCGGAACTTACTCGACAAGGAAT 20767870 Query 106 TTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTT 154 |||||||||||||||||||||||||||||||||||||| || ||||||| Sbjct 20767869 TTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTCACCGGGGCTT 20767821 >seq6 Length=25711811 Score = 123 bits (136), Expect = 5e-26 Identities = 167/235 (71%), Gaps = 31/235 (13%) Strand=Plus/Minus Query 47 GAGACAGTGCCCAAATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATT 106 |||| || |||||||||||||| ||||| ||| ||||| ||||||||||||||||||||| Sbjct 14856439 GAGATAGAGCCCAAATCGTTACACCTTTTGTGTGGGTCAGAACTTACCCGACAAGGAATT 14856380 Query 107 TCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCT 166 |||||||||||||| |||||||| || ||||||| |||| | || Sbjct 14856379 TCGCTACCTTAGGA---------------CCGCCGTTCACCGGGGCTTCAGTTGCCGACT 14856335 Query 167 TCGATTGCTCT-AACAGATC--------CCCTTAACCTTCCAGCACCGGGCAGGCGTCAG 217 || || | | ||| || ||| || || | | || |||| | |||| Sbjct 14856334 ----TTCCTGTCATCAGTTCTTTTAACTTTCTTGACTTTTCGGTACTAGGCAAGTATCAG 14856279 Query 218 CTCCTATACATCGTCTTGCGACTTAGCAGAAACCTGTGTTTTT---GGTAAACAG 269 ||| |||||| ||||||||||| ||||| || ||| ||||| ||||||||| Sbjct 14856278 TTCCCATACATGATCTTGCGACTTTGCAGAGACATGTTTTTTTTAAGGTAAACAG 14856224 >seq7 Length=24128185 Score = 100 bits (110), Expect = 6e-19 Identities = 72/83 (87%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 192 ACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAGAAACC 251 |||||||||||||||||||| ||||| ||||||||||| || | |||||||||| || Sbjct 19982015 ACCTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCACTTAGCAGAGTCC 19981956 Query 252 TGTGTTTTTGGTAAACAGTCGCT 274 ||||||||| |||||||||||| Sbjct 19981955 TGTGTTTTTAATAAACAGTCGCT 19981933 Score = 96.9 bits (106), Expect = 7e-18 Identities = 71/83 (86%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 192 ACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAGAAACC 251 |||||||||||||||||||| || || ||||||||||| || | ||||||||||| || Sbjct 3056724 ACCTTCCAGCACCGGGCAGGTGTTAGACTCTATACATCGTGTTACCACTTAGCAGAATCC 3056665 Query 252 TGTGTTTTTGGTAAACAGTCGCT 274 ||||||||| |||| ||||||| Sbjct 3056664 TGTGTTTTTAATAAATAGTCGCT 3056642 >seq2 Length=31686972 Score = 100 bits (110), Expect = 6e-19 Identities = 72/83 (87%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 192 ACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAGAAACC 251 |||||||||||||||||||| ||||| ||||||||||| || | |||||||||| || Sbjct 22634356 ACCTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCACTTAGCAGAGTCC 22634297 Query 252 TGTGTTTTTGGTAAACAGTCGCT 274 ||||||||| |||||||||||| Sbjct 22634296 TGTGTTTTTAATAAACAGTCGCT 22634274 >seq10 Length=19274048 Score = 78.8 bits (86), Expect = 2e-12 Identities = 75/94 (80%), Gaps = 3/94 (3%) Strand=Plus/Plus Query 192 ACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAGAAACC 251 ||||| | ||| || ||| ||||||| || ||||||| ||||| || || |||||||| Sbjct 13000790 ACCTTTCGGCATTGGACAGCCGTCAGCCCCCATACATCATCTTGTGATTTTGCAGAAACT 13000849 Query 252 TGTGTTTTTGGTAAA--CAGTCGCT-TGGGCCTA 282 ||||||||||||||| |||| || ||||||| Sbjct 13000850 TGTGTTTTTGGTAAAAGGAGTCACTCAGGGCCTA 13000883 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1062399872512