Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20barthii_20[genbank_20GCA_5F000182155.3_202014-05-08] 12 sequences; 308,272,304 total letters Query= AAMG01000811.1 Length=502 Score E Sequences producing significant alignments: (Bits) Value seq3 192 2e-46 seq2 167 7e-39 seq6 140 1e-30 seq8 109 2e-21 seq9 86.0 2e-14 >seq3 Length=33311619 Score = 192 bits (212), Expect = 2e-46 Identities = 187/237 (79%), Gaps = 3/237 (1%) Strand=Plus/Plus Query 267 GACTGCCGGTGACAAACCGGAGGAAGGTGGGGACGACGTCAAATCATCATGCCCCTTATG 326 ||||||| |||| | || ||||||||||||||| |||||||| || |||| |||||||| Sbjct 21812712 GACTGCCAGTGAGATACTGGAGGAAGGTGGGGATGACGTCAAGTCCGCATGGCCCTTATG 21812771 Query 327 ATTTGGGCTACACACGTGCTACAATGGACAAT-ACAAAGGGCAGCGAAACCGCGAGGTCA 385 | ||| |||||||||||||||||| |||| |||| ||| ||| | | | ||| Sbjct 21812772 GGCTAGGCCACACACGTGCTACAATGG-CAATGACAATGGGAAGCAAGGCTGTAAGGCGG 21812830 Query 386 AGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAAG 445 ||| ||||| || ||| ||||||||||||||| ||||||||||| | |||||| Sbjct 21812831 AGCGAATCCGGAAAGATTGC-CTCAGTTCGGATTGTTCTCTGCAACTCGGGAACATGAAG 21812889 Query 446 CTGGAATCGCTAGTAATCGTAGATCAGCATGCTACGGTGAATACGTTCCCGCTCCCT 502 || ||||||||||||||| |||||||||||| ||||||||| || |||| |||| Sbjct 21812890 TTGAAATCGCTAGTAATCGCGGATCAGCATGCTGCGGTGAATATGTACCCGGGCCCT 21812946 Score = 129 bits (142), Expect = 2e-27 Identities = 170/232 (73%), Gaps = 14/232 (6%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||| ||||||||||||||||| |||| || |||||||||||||||||| Sbjct 21812380 TACGGTCGCAAGACCAAAACTCAAAGGAATTGATGGGG-CCTGCACAAGCGGTGGAGCAT 21812438 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120 |||||||||||||| |||| | | |||||||||| ||||||| | ||| | Sbjct 21812439 GTGGTTTAATTCGATACAACTTGCAAAACCTTACCAGCCCTTGACA---TATGAAC---- 21812491 Query 121 TAGAGATAGAGGTTTCCCCTTCG-GGGGACAGAGT----GACAGGTGATGCATGGTTGTC 175 | | | || | | | || || || | ||||||| ||||| | |||| Sbjct 21812492 -AACAAAACCTGTCTTTAATGGGATGGTACTGACTTTCATACAGGTGCTGCATTGCTGTC 21812550 Query 176 GTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCT 227 ||||||||||||||||||||||| || |||||| |||||||| |||||| Sbjct 21812551 GTCAGCTCGTGTCGTGAGATGTTTAGTCAAGTCCTATAACGAGCGAAACCCT 21812602 >seq2 Length=31686972 Score = 167 bits (184), Expect = 7e-39 Identities = 153/192 (80%), Gaps = 1/192 (1%) Strand=Plus/Minus Query 306 CAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAATACAAAGG 365 ||| ||||||||||||||||| ||||| |||||||||||||||||| | ||||||| Sbjct 698290 CAAGTCATCATGCCCCTTATGCCCTGGGCGACACACGTGCTACAATGGGCGGGACAAAGG 698231 Query 366 GCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTC 425 | |||| ||||||| ||| || ||| ||| || |||||||||||||| || | Sbjct 698230 GTCGCGATCTCGCGAGGGTGAGCTAACTCCAAAAACCCGTCCTCAGTTCGGATTGCAGGC 698171 Query 426 TGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAG-CATGCTACGGTG 484 ||||||||| || ||||||| ||||||||||||||||| |||||| ||| | ||| | Sbjct 698170 TGCAACTCGCCTGCATGAAGCAGGAATCGCTAGTAATCGCCGATCAGCCATACGGCGGCG 698111 Query 485 AATACGTTCCCG 496 ||| |||||||| Sbjct 698110 AATCCGTTCCCG 698099 Score = 118 bits (130), Expect = 3e-24 Identities = 115/147 (78%), Gaps = 1/147 (1%) Strand=Plus/Plus Query 156 ACAGGTGATGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAAC 215 ||||||| ||||||| |||||||||||||||| || || |||||| ||||||| |||||| Sbjct 10310438 ACAGGTGGTGCATGGCTGTCGTCAGCTCGTGTTGTAAGGTGTTGGTTTAAGTCTCGCAAC 10310497 Query 216 GAGCGCAACCCTTAAGCTTAGTTGCCATCATTAAGTTGGGCACTCTAAGTTGACTGCCGG 275 ||||||||||| | | |||||||||| | | |||| || || | | ||| |||| Sbjct 10310498 AAGCGCAACCCTCATGTTTAGTTGCCA-CTATGAGTTTGGAACCTTGAACAGACCGCCGA 10310556 Query 276 TGACAAACCGGAGGAAGGTGGGGACGA 302 || || ||||||||| | | ||| || Sbjct 10310557 TGTTAAGCCGGAGGAATGAGAGGATGA 10310583 >seq6 Length=25711811 Score = 140 bits (154), Expect = 1e-30 Identities = 172/230 (75%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 267 GACTGCCGGTGACAAACCGGAGGAAGGTGGGGACGACGTCAAATCATCATGCCCCTTATG 326 || |||| |||| | || ||||||||||||||| |||||||| || |||| | |||||| Sbjct 9552989 GATTGCCAGTGAGATACTGGAGGAAGGTGGGGATGACGTCAAGTCCGCATGGCACTTATG 9553048 Query 327 ATTTGGGCTACACACGTGCTACA-ATGGACAAT-ACAAAGGGCAGCGAAACCGCGAGGTC 384 ||||| |||||||||| ||| |||| |||| |||| ||| ||| | | | ||| Sbjct 9553049 GGCTGGGCCACACACGTGCGACATATGG-CAATGACAATGGGAAGCAAGGCTGTAAGGCA 9553107 Query 385 AAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAA 444 ||||||| || |||| | ||||||||| ||| | | ||||||||| | ||||| Sbjct 9553108 GAGCAAAT-CCGGAAAGATTGCCTCAGTTCGAATTATTCTATGCAACTCGGGAACATGAA 9553166 Query 445 GCTGGAATCGCTAGTAATCGTAGATCAGCATGCTACGGTGAATACGTTCC 494 | || ||| |||||||||| ||||| ||||| |||||||| || || Sbjct 9553167 GTTGAAATTGCTAGTAATCACGGATCAACATGCCGTGGTGAATATGTACC 9553216 >seq8 Length=22678724 Score = 109 bits (120), Expect = 2e-21 Identities = 86/103 (83%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||| |||||||||||||| |||| |||| ||| ||||||| ||||||||| Sbjct 3237268 TACGTTCGCAAGAATGAAACTCAAAGGATTTGAAGGGGGCCCACACAAGCAGTGGAGCAT 3237327 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTG 103 |||||||||| ||| |||| | ||||||||||||| |||| Sbjct 3237328 GTGGTTTAATACGATGCAAAGATGAGAACCTTACCAAGGCTTG 3237370 Score = 107 bits (118), Expect = 6e-21 Identities = 131/175 (75%), Gaps = 3/175 (2%) Strand=Plus/Minus Query 289 GAAGGTGGGGACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTAC 348 ||||||||||| |||||||| || |||| |||||||| ||||| ||||||||||||| Sbjct 14314356 GAAGGTGGGGATGACGTCAAGTCCGCATGGCCCTTATGGGCTGGGCCACACACGTGCTAC 14314297 Query 349 AATGGACAAT-ACAAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTC 407 ||| | |||| |||| ||| ||| | | | ||| ||||||| || |||| | | Sbjct 14314296 AATTG-CAATGACAATGGGAAGCAAGGCTGTAAGGCGGAGCAAAT-CCGGAAAGATTGCC 14314239 Query 408 TCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAAT 462 ||| || ||||||| |||||||||| | |||||| || ||||| ||||| Sbjct 14314238 TCAATTTGGATTGTTCTCTGCAACTCAGGAACATGAAGTTGAAATCGAACGTAAT 14314184 >seq9 Length=19219615 Score = 86.0 bits (94), Expect = 2e-14 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 156 ACAGGTGATGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAAC 215 ||||||| ||||||| ||||||||||||||||||||||||||| ||| |||||| ||| Sbjct 3546182 ACAGGTGCTGCATGGCTGTCGTCAGCTCGTGTCGTGAGATGTTTGGTCAAGTCCTATAAC 3546123 Query 216 GAGCG 220 ||||| Sbjct 3546122 GAGCG 3546118 Score = 82.4 bits (90), Expect = 2e-13 Identities = 90/119 (76%), Gaps = 2/119 (2%) Strand=Plus/Minus Query 84 AAGAACCTTACCAAATCTTGACATCCTCTGACCCCTCTAGAGATAGAGGTTTCCCCTTCG 143 ||||||||||||| |||||||| | || ||||| || | ||||| | |||| Sbjct 3542928 AAGAACCTTACCAGGGCTTGACATGCCGCGAATCCTCTTGAAAGAGAGGGGTGCCCTC-- 3542871 Query 144 GGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGT 202 ||| || | ||||||| ||||||| ||||||||||||||| ||| || |||||||| Sbjct 3542870 GGGAACGCGGACACAGGTGGTGCATGGCTGTCGTCAGCTCGTGCCGTAAGGTGTTGGGT 3542812 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1503999819520