Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20barthii_20[genbank_20GCA_5F000182155.3_202014-05-08] 12 sequences; 308,272,304 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq7 399 4e-109 seq1 98.7 2e-18 >seq7 Length=24128185 Score = 399 bits (442), Expect = 4e-109 Identities = 265/293 (90%), Gaps = 1/293 (0%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 ||||| | ||||||| || | ||| |||||||| ||||||||||||||||||||||||| Sbjct 9736744 TACTAGGTTGAATTACTATCGCGGC-ACGGTCATTAGTAGGGTAAAACTAACCTGTCTCA 9736802 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120 ||||||||||||||||||||||||||||||| |||||||||||||||||| ||| || Sbjct 9736803 CGACGGTCTAAACCCAGCTCACGTTCCCTATTGGTGGGTGAACAATCCAACACTTGGTGA 9736862 Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180 |||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 9736863 ATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAATGATCAAAAAGCAACGTCGCTAT 9736922 Query 181 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 240 ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| | Sbjct 9736923 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACATCTCTAGCTT 9736982 Query 241 CAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 |||| | | | || ||||||||||||||||||||||||||| |||| |||||| Sbjct 9736983 CAAACTCCAAAGGTCTAAAGGATCGATAGGCCACACTTTCACGGTTCGTATTC 9737035 >seq1 Length=36915442 Score = 98.7 bits (108), Expect = 2e-18 Identities = 87/109 (80%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 76 AGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTAT 135 ||||||||||||||||| ||| ||||| ||| | | ||| ||| | ||||| || Sbjct 22332970 AGCTCACGTTCCCTATTGGTGTGTGAATAATTCGAAACTTGATGAACTTTGCTTTAAAAT 22332911 Query 136 GATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAAC 184 ||||||||||||| ||||| |||||| |||||||||||| |||| ||| Sbjct 22332910 GATAGGAAGAGCCAACATCAAAGGATAAAAAAGCAACGTACCTATCAAC 22332862 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854399897472