Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20barthii_20[genbank_20GCA_5F000182155.3_202014-05-08] 12 sequences; 308,272,304 total letters Query= AAMG01001083.1 Length=339 Score E Sequences producing significant alignments: (Bits) Value seq6 138 2e-30 seq3 78.8 2e-12 >seq6 Length=25711811 Score = 138 bits (152), Expect = 2e-30 Identities = 143/186 (77%), Gaps = 6/186 (3%) Strand=Plus/Plus Query 157 AGAGTAACGGAGGCGCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCAC---AGT 213 |||| |||||||||| ||||| | |||||| || ||| ||| | | ||| Sbjct 10251160 AGAGAAACGGAGGCGTGCAAAGGTTTCCTCAGGCCAGACGGA---CATTGGTCCTCGAGT 10251216 Query 214 GCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGG 273 ||||||||| ||||| | ||||||| | || | | ||| ||||| |||||||||||| Sbjct 10251217 GCAAAGGCAGAAGGGAGCTTGACTGTAAGACTCACCCGTCGAGCAGAGACGAAAGTCGGC 10251276 Query 274 CTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTG 333 |||| ||||||| |||||| || ||||| ||||||||||| ||||||||||| ||| || Sbjct 10251277 CTTAGTGATCCGACGGTGCCGAGTGGAAGGGCCGTCGCTCAACGGATAAAAGTTACTCTA 10251336 Query 334 GGGATA 339 |||||| Sbjct 10251337 GGGATA 10251342 >seq3 Length=33311619 Score = 78.8 bits (86), Expect = 2e-12 Identities = 85/113 (75%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 212 GTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCG 271 || ||| |||| || | | |||||||| | || | ||| |||| ||||||||||| Sbjct 4001578 GTACAACGGCAGAAAGAAGCTTGACTGCAAGACTCATCTGTCGAGCAAAGACGAAAGTCG 4001519 Query 272 GGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAA 324 | ||| ||||||| | |||||| || || ||||||||||| | |||||||| Sbjct 4001518 GCCTTGGTGATCCGACAATGCTGAGTGAAAAGGCCGTCGCTCAATGGATAAAA 4001466 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 982399882112