Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20barthii_20[genbank_20GCA_5F000182155.3_202014-05-08] 12 sequences; 308,272,304 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq11 217 3e-54 seq2 217 3e-54 seq3 205 2e-50 seq4 194 4e-47 seq7 154 3e-35 seq5 114 3e-23 seq10 93.3 9e-17 seq1 77.0 7e-12 >seq11 Length=23014695 Score = 217 bits (240), Expect = 3e-54 Identities = 151/170 (89%), Gaps = 1/170 (1%) Strand=Plus/Minus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 |||||||||||| || |||||||||||||||||| || |||||||||||||||||| Sbjct 9335615 CACGCGGCATTG-CTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTC 9335557 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148 |||||||||||||| |||||||||||| |||||||| |||||||||||||| |||||| | Sbjct 9335556 CCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCT 9335497 Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGAC 198 || |||| |||||||||| ||| ||| ||||||||||||||||||| ||| Sbjct 9335496 ACTGATCATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAATCAGAC 9335447 >seq2 Length=31686972 Score = 217 bits (240), Expect = 3e-54 Identities = 151/170 (89%), Gaps = 1/170 (1%) Strand=Plus/Plus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 |||||||||||| || ||||||||||||||||||| || |||||||||||||||||| Sbjct 5421232 CACGCGGCATTG-CTCCATCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTC 5421290 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148 ||||||||||||| |||||||||||| |||||||||||||||||||||| |||||| | Sbjct 5421291 TCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGACTGATCATCCTCTTGGACCAGCT 5421350 Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGAC 198 || |||| |||||||||| ||| ||| ||||||||||||||||||| ||| Sbjct 5421351 ACTGATCATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAATCAGAC 5421400 >seq3 Length=33311619 Score = 205 bits (226), Expect = 2e-50 Identities = 174/211 (82%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 1 CTTTACAATCCGAA--GACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGC 58 |||||||| | | | | ||||||| ||| |||||| |||| ||||||| ||||||||| Sbjct 21811836 CTTTACAAGCGGCATTGCCCTTCTT-CACTCACGCGATATTG-CTGGATCGGGCTTTCGC 21811779 Query 59 CCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCC 118 ||||||||||| |||||||||||||||| ||||| ||||||||| |||||||||||| || Sbjct 21811778 CCATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCTGGGCCGTGTCTCAGTCCC 21811719 Query 119 AGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCT 178 |||||| |||||||||| ||||||| || | ||| | | |||||| |||| ||||| Sbjct 21811718 AGTGTGGCTGATCATCCGAAAAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTTACCC 21811659 Query 179 CACCAACTAGCTAATCCGACCTAGGCTCATC 209 |||||||| ||||| | || ||||||||| Sbjct 21811658 GACCAACTACCTAATACTACGCAGGCTCATC 21811628 >seq4 Length=27574323 Score = 194 bits (214), Expect = 4e-47 Identities = 177/220 (80%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 1 CTTTACAATCCGAA--GACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGC 58 |||||||| | | | | ||||||| ||| |||||| |||| ||||||| ||||||||| Sbjct 25182119 CTTTACAAGCGGCATTGCCCTTCTT-CACTCACGCGATATTG-CTGGATCGGGCTTTCGC 25182176 Query 59 CCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCC 118 ||||||||||| |||||||||||||||| ||||| |||||| || |||||||||||| || Sbjct 25182177 CCATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCC 25182236 Query 119 AGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCT 178 ||||| |||||||||| ||||||| || ||| | | |||||| |||| ||||| Sbjct 25182237 AGTGTAGCTGATCATCCGAAAAGACCAGCTAAACATCATTGGCTTGGTCAGCCTTTACCC 25182296 Query 179 CACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGC 218 |||||||| ||||| | || ||||||||| | ||||| Sbjct 25182297 GACCAACTACCTAATACTACGCAGGCTCATCAAACAGCGC 25182336 >seq7 Length=24128185 Score = 154 bits (170), Expect = 3e-35 Identities = 118/140 (84%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 54 TTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCA 113 |||||||||||||||| |||||||||||||||| ||||| |||||| || |||||||||| Sbjct 22005141 TTCGCCCATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCA 22005200 Query 114 GTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCAT 173 || |||||||| |||||||||| ||||||| || | ||| | | |||||| |||| | Sbjct 22005201 GTCCCAGTGTGGCTGATCATCCGAAAAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTT 22005260 Query 174 TACCTCACCAACTAGCTAAT 193 |||| |||||||| ||||| Sbjct 22005261 TACCCGACCAACTACCTAAT 22005280 Score = 145 bits (160), Expect = 2e-32 Identities = 126/155 (81%), Gaps = 1/155 (1%) Strand=Plus/Plus Query 23 TTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGC 82 ||||| |||||| |||| ||||||| |||||||||||||||||||| | |||||||||| Sbjct 11027400 TTCACTCACGCGATATTG-CTGGATCGGGCTTTCGCCCATTGTCCAAGACTCCCCACTGC 11027458 Query 83 TGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGA 142 |||| | ||| ||||| ||| | |||||| ||| | |||||| |||||||||| ||| Sbjct 11027459 TGCCCCTCGTGGGAGTTTGGGCAGTGTCTAAGTCCTAGTGTGGCTGATCATCCGAAAAGA 11027518 Query 143 CCAGTTACGGATCGTCGCCTTGGTGAGCCATTACC 177 |||| || | ||| | | |||||| |||| ||||| Sbjct 11027519 CCAGCTAAGCATCATTGGCTTGGTCAGCCTTTACC 11027553 >seq5 Length=24206129 Score = 114 bits (126), Expect = 3e-23 Identities = 107/135 (79%), Gaps = 1/135 (1%) Strand=Plus/Minus Query 32 GCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCG 91 ||||||||| || |||||||||| | ||||| || ||| ||||||||||| ||||| Sbjct 4013094 GCGGCATTG-CTCCGTCAGGCTTTCTCTCATTGCGGAAAATTTCCCACTGCTGCTTCCCG 4013036 Query 92 TAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACG 151 ||||||||||| ||||| ||||| |||||| |||||| |||||| ||||| ||| Sbjct 4013035 TAGGAGTCTGGGTCGTGTTTCAGTCTCAGTGTAGCTGATCGTCCTCTTAGACCGACTACT 4012976 Query 152 GATCGTCGCCTTGGT 166 |||| | || ||||| Sbjct 4012975 GATCATTGCTTTGGT 4012961 >seq10 Length=19274048 Score = 93.3 bits (102), Expect = 9e-17 Identities = 68/78 (87%), Gaps = 1/78 (1%) Strand=Plus/Minus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 |||||||||||| || |||||||||||||||||| || |||| ||||||||||||| Sbjct 18769422 CACGCGGCATTG-CTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCTCCACTGCTGCCTC 18769364 Query 89 CCGTAGGAGTCTGGACCG 106 |||| ||||||||||||| Sbjct 18769363 CCGTGGGAGTCTGGACCG 18769346 >seq1 Length=36915442 Score = 77.0 bits (84), Expect = 7e-12 Identities = 56/65 (86%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 127 TGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACT 186 |||||||||||| |||||| ||| |||| ||| |||||| ||| ||| ||||||||||| Sbjct 28859594 TGATCATCCTCTTGGACCAGCTACTGATCATCGTCTTGGTAAGCTATTGCCTCACCAACT 28859653 Query 187 AGCTA 191 ||||| Sbjct 28859654 AGCTA 28859658 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1071999871360