Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20barthii_20[genbank_20GCA_5F000182155.3_202014-05-08] 12 sequences; 308,272,304 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq6 132 2e-28 seq11 118 4e-24 seq10 109 2e-21 seq4 95.1 4e-17 >seq6 Length=25711811 Score = 132 bits (146), Expect = 2e-28 Identities = 163/220 (74%), Gaps = 6/220 (3%) Strand=Plus/Minus Query 137 GCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCAC 196 ||||| ||| || |||||||||||||||||||||| | | ||| || |||| |||||| Sbjct 7175503 GCTGCGCCTCAACGCATTTCGGGGAGAACCAGCTAGCTCTGGGTTCGAGTGGCATTTCAC 7175444 Query 197 CCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGT 256 ||||| ||||| |||||| | | | || ||| | ||| ||||||| |||| | || Sbjct 7175443 CCCTAACCACAACTCATCCGTTGATTCTTGAACATCAGTCGGTTCGGACCTCTGCTTAGT 7175384 Query 257 CTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGT-CTTGATC-GTG 314 | | || |||||| |||| |||||||||||||| | ||||||| | | | | || Sbjct 7175383 TTCATCCAAGCTTCATCCTGGTCATGGATAGATCACCCAGGTTCGGGTCCATAAGCAGTN 7175324 Query 315 CCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCT 354 || | |||||||| ||||||||||| |||||||| Sbjct 7175323 ACAAT----CGCCCTATGAAGACTCGCTTTCACTACGGCT 7175288 >seq11 Length=23014695 Score = 118 bits (130), Expect = 4e-24 Identities = 85/98 (87%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 467 CATGGTTTCAGGTACTATTTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGT 526 || ||||||| || |||||||||| ||| | |||| | |||||||||||||||||||||| Sbjct 10177100 CACGGTTTCACGTTCTATTTCACTACCCACTAGGGATTCTTTTCACCTTTCCCTCACGGT 10177041 Query 527 ACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTT 564 ||| | |||||||||||||| |||||||||||| ||| Sbjct 10177040 ACTACTTCGCTATCGGTCACCCAGGAGTATTTAGCCTT 10177003 >seq10 Length=19274048 Score = 109 bits (120), Expect = 2e-21 Identities = 116/152 (76%), Gaps = 1/152 (1%) Strand=Plus/Minus Query 155 TCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCATC 214 ||| ||| |||||||||| | | ||| |||||||||||||| || ||||| |||||| Sbjct 5033501 TCGCGGAAAACCAGCTATATCCGATCTTGGTTGGCCTTTCACCCATAGCCACAAGTCATC 5033442 Query 215 CCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTA-CCCGCGCTTCAAC 273 ||| | ||| | || || ||||||||||||||||| | | ||| | | ||||||| Sbjct 5033441 CCCGTATTTTGCCACATACGTGGGTTCGGTCCTCCAAGGCCTGTTAGAGCTCTCTTCAAC 5033382 Query 274 CTGCCCATGGATAGATCACTTCGCTTCGGGTC 305 |||| ||||| |||||| | | |||||||| Sbjct 5033381 CTGCTCATGGCTAGATCGATCGGTTTCGGGTC 5033350 >seq4 Length=27574323 Score = 95.1 bits (104), Expect = 4e-17 Identities = 129/178 (72%), Gaps = 6/178 (3%) Strand=Plus/Minus Query 179 GTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGG 238 ||| || |||| ||||||||||| ||||| |||||| || | | |||||| | ||| || Sbjct 6183901 GTTCGAGTGGCATTTCACCCCTAACCACAACTCATCCGCTGATTCTTCAACATCAGTCGG 6183842 Query 239 TTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCT 298 ||||| ||| | || | | || |||||| || | |||| ||||||||| | | Sbjct 6183841 TTCGGACCTNTGCTTAGTTTCATCCAAGCTTCATCCAGGTCATGTATAGATCACCCAGGT 6183782 Query 299 TCGGGT-CTTGATC-GTGCCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCT 354 |||||| | | | | ||| || | |||||||| |||||||||||||||| ||| Sbjct 6183781 TCGGGTCCATAAGCAGTGACAAT----CGCCCTATGAAGACTCGCTTTCGCTACNGCT 6183728 Score = 75.2 bits (82), Expect = 4e-11 Identities = 65/81 (80%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 467 CATGGTTTCAGGTACTATTTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGT 526 || ||||||| || |||||||||| ||| | ||||| ||||| |||||||||||| || Sbjct 18395907 CACGGTTTCATGTTCTATTTCACTACCCACTGGGGGTTCTTTTTACCTTTCCCTCATGGC 18395966 Query 527 ACTTGTCCGCTATCGGTCACC 547 ||| | |||||| |||||| Sbjct 18395967 ACTACTTTGCTATCAGTCACC 18395987 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1817599781888