Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20barthii_20[genbank_20GCA_5F000182155.3_202014-05-08] 12 sequences; 308,272,304 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq11 118 3e-24 seq1 80.6 7e-13 seq4 77.0 8e-12 >seq11 Length=23014695 Score = 118 bits (130), Expect = 3e-24 Identities = 91/107 (85%), Gaps = 1/107 (1%) Strand=Plus/Minus Query 270 ACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCACGGT 329 ||||||||| | ||||||||||| ||| || ||| |||||||| ||||||||||||||| Sbjct 10177099 ACGGTTTCACGTTCTATTTCACTACCCACTA-GGGATTCTTTTCACCTTTCCCTCACGGT 10177041 Query 330 ACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGG 376 |||| ||| |||||||||| ||| |||||||||||||| | | ||| Sbjct 10177040 ACTACTTCGCTATCGGTCACCCAGGAGTATTTAGCCTTGCAAGGTGG 10176994 >seq1 Length=36915442 Score = 80.6 bits (88), Expect = 7e-13 Identities = 105/144 (73%), Gaps = 4/144 (3%) Strand=Plus/Plus Query 188 GCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGTG 247 ||||||| || |||||| | | |||| | ||| ||| |||| |||| | || | Sbjct 13968617 GCCACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCAGAGATCACTTTC 13968676 Query 248 GGCTCCCACTGCTTGTACGCATA---CGGTTTCAGGATCTATTTCACTCCCCTCTCCGGG 304 |||| |||||||| || | |||||||| | ||||||||||| ||| || ||| Sbjct 13968677 CCCTCCNACTGCTTGGGAGCTCAGCACGGTTTCACGTTCTATTTCACTACCCACTG-GGG 13968735 Query 305 GTTCTTTTCGCCTTTCCCTCACGG 328 ||||||||| ||||||||||| || Sbjct 13968736 GTTCTTTTCACCTTTCCCTCATGG 13968759 >seq4 Length=27574323 Score = 77.0 bits (84), Expect = 8e-12 Identities = 205/300 (68%), Gaps = 18/300 (6%) Strand=Plus/Minus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 ||||| |||| ||||| | || |||||| ||||||||||| ||| ||||| | Sbjct 6183877 CCACAACTCAT-CCGCTGA-TTCTTCAACATCAGTCGGTTCGGACCTNTGCTTAGTT-TC 6183821 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 | |||| ||| || || | ||| | ||||||| ||| | || |||||| || | || Sbjct 6183820 ATCCAAGCTT-CATCCAGGTCAT-GTATAGATCACCCAGGTT-CGGGTCCATAAGC-AGT 6183765 Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCT--ATTCGGT----TAA 182 ||| | ||||||| ||||||||| ||||||||| |||| | ||| || | | Sbjct 6183764 GACAAT-CGCCCTATGAAGACTCGC-TTTCGCTACNGCTCCGGTGGGTTCCGTTCCCTTA 6183707 Query 183 GCTTTGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACA 242 | ||||||| || |||||| | | |||| | ||| ||| |||| |||| | || Sbjct 6183706 ACCAAGCCACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCAGAGATCA 6183647 Query 243 AAGTGGGCTCCCACTGCTTGTACGC---ATACGGTTTCAGGATCTATTTCACTCCCCTCT 299 | |||||||| |||| || ||||||||| | | ||||||||| ||| || Sbjct 6183646 CTTTCCCCTCCCACTACTTGGGAGCTCAGCACGGTTTCACGTTATATTTCACTACCCACT 6183587 Score = 77.0 bits (84), Expect = 8e-12 Identities = 65/79 (82%), Gaps = 1/79 (1%) Strand=Plus/Plus Query 270 ACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCACGGT 329 ||||||||| | ||||||||||| ||| || ||||||||||| ||||||||||| || Sbjct 18395908 ACGGTTTCATGTTCTATTTCACTACCCACTG-GGGGTTCTTTTTACCTTTCCCTCATGGC 18395966 Query 330 ACTAGTTCACTATCGGTCA 348 |||| || ||||| |||| Sbjct 18395967 ACTACTTTGCTATCAGTCA 18395985 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1241599851008