Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20barthii_20[genbank_20GCA_5F000182155.3_202014-05-08] 12 sequences; 308,272,304 total letters Query= AAMG01001432.1 Length=344 Score E Sequences producing significant alignments: (Bits) Value seq11 219 8e-55 seq2 168 1e-39 seq3 136 8e-30 seq4 127 4e-27 seq7 122 2e-25 seq5 104 5e-20 >seq11 Length=23014695 Score = 219 bits (242), Expect = 8e-55 Identities = 233/305 (76%), Gaps = 18/305 (6%) Strand=Plus/Minus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | ||| | ||||| |||| ||||||| | || || ||||||||||||||||||||| Sbjct 9335610 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 9335551 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 ||||||||||||||||||||||||| |||||| | ||| |||||| | || ||||| ||| Sbjct 9335550 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGAT 9335491 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCA 180 | ||| |||||| |||||| ||||||||||| |||||| | ||||||||| || || Sbjct 9335490 CATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAATCAGACGCGAGCCCCTCCTTGG 9335431 Query 181 GC-GATAAATCTTTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTT 239 || ||| || || ||| ||||| | | || | ||||||||| Sbjct 9335430 GCGGATTTCTCCTT------------TTGC--TCCTCAGCC--TACGGGGTATTAGCAAC 9335387 Query 240 CGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCG 299 |||||||| ||| |||| ||| || |||||||| || ||| ||||||||||||| || Sbjct 9335386 CGTTTCCAGTTGTTGTTCCCCTCCCAAGGGCAGGTT-CTTACGCGTTACTCACCCGTTCG 9335328 Query 300 CCACT 304 ||||| Sbjct 9335327 CCACT 9335323 >seq2 Length=31686972 Score = 168 bits (186), Expect = 1e-39 Identities = 137/166 (83%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | ||| ||||||| |||| ||||||| | || || ||||||||||||||| ||||| Sbjct 5421237 GGCATTGCTCCATCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCTCGTAG 5421296 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 ||||||||||||||||||||||||| |||| | | ||| ||||| | || ||||| ||| Sbjct 5421297 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGACTGATCATCCTCTTGGACCAGCTACTGAT 5421356 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGC 166 | ||| |||||| |||||| ||||||||||| |||||| | ||| Sbjct 5421357 CATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAATCAGACGC 5421402 >seq3 Length=33311619 Score = 136 bits (150), Expect = 8e-30 Identities = 122/153 (80%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 7 GCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT 66 |||| ||| || |||| |||||||| ||| || ||||||||||||| ||||| ||||||| Sbjct 21811796 GCTGGATCGGGCTTTCGCCCATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCT 21811737 Query 67 GGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGG 126 ||||||||||||||||||| |||||| | ||| || || || |||| ||| | || Sbjct 21811736 GGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCGAAAAGACCAGCTAAGCATCATTGG 21811677 Query 127 CTTGGTGGGCTATTATCTCACCAACTACCTAAT 159 |||||| || ||| | |||||||||||||| Sbjct 21811676 CTTGGTCAGCCTTTACCCGACCAACTACCTAAT 21811644 >seq4 Length=27574323 Score = 127 bits (140), Expect = 4e-27 Identities = 120/153 (78%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 7 GCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT 66 |||| ||| || |||| |||||||| ||| || ||||||||||||| ||||| |||||| Sbjct 25182159 GCTGGATCGGGCTTTCGCCCATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCC 25182218 Query 67 GGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGG 126 ||||||||||||||||||| ||| || | ||| || || || |||| ||| | || Sbjct 25182219 GGGCCGTGTCTCAGTCCCAGTGTAGCTGATCATCCGAAAAGACCAGCTAAACATCATTGG 25182278 Query 127 CTTGGTGGGCTATTATCTCACCAACTACCTAAT 159 |||||| || ||| | |||||||||||||| Sbjct 25182279 CTTGGTCAGCCTTTACCCGACCAACTACCTAAT 25182311 >seq7 Length=24128185 Score = 122 bits (134), Expect = 2e-25 Identities = 111/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 20 TTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCA 79 ||| |||||||| ||| || ||||||||||||| ||||| |||||| ||||||||||||| Sbjct 22005141 TTCGCCCATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCA 22005200 Query 80 GTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTGGTGGGCTAT 139 |||||| |||||| | ||| || || || |||| ||| | |||||||| || | Sbjct 22005201 GTCCCAGTGTGGCTGATCATCCGAAAAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTT 22005260 Query 140 TATCTCACCAACTACCTAAT 159 || | |||||||||||||| Sbjct 22005261 TACCCGACCAACTACCTAAT 22005280 Score = 93.3 bits (102), Expect = 8e-17 Identities = 96/126 (76%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 7 GCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT 66 |||| ||| || |||| |||||||| ||| | ||||||||||||| | ||| ||||| | Sbjct 11027417 GCTGGATCGGGCTTTCGCCCATTGTCCAAGACTCCCCACTGCTGCCCCTCGTGGGAGTTT 11027476 Query 67 GGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGG 126 |||| |||||| ||||| | |||||| | ||| || || || |||| ||| | || Sbjct 11027477 GGGCAGTGTCTAAGTCCTAGTGTGGCTGATCATCCGAAAAGACCAGCTAAGCATCATTGG 11027536 Query 127 CTTGGT 132 |||||| Sbjct 11027537 CTTGGT 11027542 >seq5 Length=24206129 Score = 104 bits (114), Expect = 5e-20 Identities = 102/132 (77%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | ||| | ||||| |||| | ||||| | || || ||||||||||| |||||||| Sbjct 4013092 GGCATTGCTCCGTCAGGCTTTCTCTCATTGCGGAAAATTTCCCACTGCTGCTTCCCGTAG 4013033 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 ||||||||| ||||| |||||| || ||| || | || ||||| || ||| |||| ||| Sbjct 4013032 GAGTCTGGGTCGTGTTTCAGTCTCAGTGTAGCTGATCGTCCTCTTAGACCGACTACTGAT 4012973 Query 121 CGTCGGCTTGGT 132 | | | ||||| Sbjct 4012972 CATTGCTTTGGT 4012961 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 998399880192