Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20barthii_20[genbank_20GCA_5F000182155.3_202014-05-08] 12 sequences; 308,272,304 total letters Query= AAMG01001752.1 Length=400 Score E Sequences producing significant alignments: (Bits) Value seq8 176 1e-41 seq1 163 7e-38 seq2 143 6e-32 seq4 141 2e-31 >seq8 Length=22678724 Score = 176 bits (194), Expect = 1e-41 Identities = 157/194 (81%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 207 CCACAGCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTTGACCA 266 ||||||||||||| ||| |||| |||||| | ||| || |||| | || || || Sbjct 2032833 CCACAGCTTCGGCCGATCGCTTA-GCCCCGTT-CATCTTCAGCGCAAGGGCGCTCGATCA 2032776 Query 267 GTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTA 326 ||||||||||||||||||||| |||| |||||||||| | || |||||||||| ||||| Sbjct 2032775 GTGAGCTATTACGCACTCTTTAAAGGGTGGCTGCTTCTAGGCAAACCTCCTGGCTGTCTT 2032716 Query 327 CGCAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGG 386 ||| | |||| |||||| ||||||| || |||||||||||||||| ||||| ||| Sbjct 2032715 TGCACCCCCACCTCCTTTATCACTGAGCGGTCATTTAGGGGCCTTAGCTGGTGATCCGGG 2032656 Query 387 CTGTTTCCCTCTCG 400 |||||||||||||| Sbjct 2032655 CTGTTTCCCTCTCG 2032642 >seq1 Length=36915442 Score = 163 bits (180), Expect = 7e-38 Identities = 174/226 (77%), Gaps = 9/226 (4%) Strand=Plus/Minus Query 179 ACGCTCCCCTACCCAACCAC----ACAGGTTGCCACAGCTTCGGCGGATAACTTAAGCCC 234 ||||||||||||| | || ||| | ||||||||||||| ||| |||| |||| Sbjct 450733 ACGCTCCCCTACCGATGCATTTTGACA---TCCCACAGCTTCGGCAGATCGCTTA-GCCC 450678 Query 235 CGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAGGAT 294 || | ||| || |||| | || || ||||||||||||||||||||||| |||| | Sbjct 450677 CGTT-CATCTTCAGCGCAAGGGCGCTCGATCAGTGAGCTATTACGCACTCTTTAAAGGGT 450619 Query 295 GGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTGAGT 354 ||||||||| | || ||| |||||| ||||| ||| | |||| |||||| ||||||| Sbjct 450618 GGCTGCTTCTAGGCAAACTTCCTGGCTGTCTTTGCACCCCCACCTCCTTTATCACTGAGC 450559 Query 355 CACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400 || |||||||||||||||| ||| | ||||||||| ||||||| Sbjct 450558 GGTCATTTAGGGGCCTTAGCTGGTGACCCGGGCTGTTTACCTCTCG 450513 Score = 141 bits (156), Expect = 2e-31 Identities = 148/192 (77%), Gaps = 11/192 (6%) Strand=Plus/Plus Query 212 GCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGC---GGAATCACTTGACCAGT 268 |||| || | || |||| ||||| | ||| | |||| || ||| || ||||||| Sbjct 6250257 GCTTTGGTGAATCACTTGAGCCCTGAGACAATTTCGGTGCCATGGAG---CTAGACCAGT 6250313 Query 269 GAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACG 328 ||||||||| || |||| ||||||||||||||||||||| |||| ||||||||| || Sbjct 6250314 GAGCTATTANGCTTTCTTCAAAGGATGGCTGCTTCCAAGCCCACCTACTGGTTGTCATCG 6250373 Query 329 CAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCT 388 ||| ||||||| ||||| ||| | ||||||| ||||||| | |||||||||| Sbjct 6250374 ---CTC--GATCCTTTTCCACTAAGTGATTGCTTAGGGACCTTAGCGTACGATCTGGGCT 6250428 Query 389 GTTTCCCTCTCG 400 |||||||||||| Sbjct 6250429 GTTTCCCTCTCG 6250440 >seq2 Length=31686972 Score = 143 bits (158), Expect = 6e-32 Identities = 139/178 (78%), Gaps = 6/178 (3%) Strand=Plus/Minus Query 222 ATAACTTAAGCCCCGCTACATTATCGGCGC---GGAATCACTTGACCAGTGAGCTATTAC 278 || |||| ||||| | ||||| |||| || ||| || ||||||||||||||||| Sbjct 22634736 ATCACTTGAGCCCTGAGACATTTTCGGTGCCATGGAG---CTAGACCAGTGAGCTATTAC 22634680 Query 279 GCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACA 338 || || | ||||||||||||||||||||| |||||||||||||| ||| ||| Sbjct 22634679 GCTTTCNTCAAAGGATGGCTGCTTCCAAGCCCACCTCCTGGTTGTCATCGCTCGATCACT 22634620 Query 339 TCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCT 396 |||||| ||||| ||| | ||||||| ||||||| | |||||||||||||||||| Sbjct 22634619 TCCTTTTCCACTAAGTGATTGCTTAGGGACCTTAGCGTACGATCTGGGCTGTTTCCCT 22634562 >seq4 Length=27574323 Score = 141 bits (156), Expect = 2e-31 Identities = 111/133 (83%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 268 TGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTAC 327 |||| ||| ||||||||||| |||| |||||||||| | || |||||||||| ||||| Sbjct 8648237 TGAGATATAACGCACTCTTTAAAGGGTGGCTGCTTCTAGGCAAACCTCCTGGCTGTCTTT 8648178 Query 328 GCAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGC 387 ||| | |||| |||||| ||||||| || |||||||||||||||| ||||| |||| Sbjct 8648177 GCACCCCCACCTCCTTTATCACTGAGCGGTCATTTAGGGGCCTTAGCTGGTGATCCGGGC 8648118 Query 388 TGTTTCCCTCTCG 400 ||||||||||||| Sbjct 8648117 TGTTTCCCTCTCG 8648105 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177599858688