Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20barthii_20[genbank_20GCA_5F000182155.3_202014-05-08] 12 sequences; 308,272,304 total letters Query= AAMG01001821.1 Length=161 Score E Sequences producing significant alignments: (Bits) Value seq3 114 1e-23 seq8 91.5 1e-16 seq6 86.0 5e-15 >seq3 Length=33311619 Score = 114 bits (126), Expect = 1e-23 Identities = 122/160 (76%), Gaps = 1/160 (1%) Strand=Plus/Minus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 ||||||||||| |||||||| ||| | | ||||| || ||| ||||| ||| | | Sbjct 21812878 CGAGTTGCAGAGAACAATCCGAACTGAGGCAATCTTTCCGG-ATTCGCTCCGCCTTACAG 21812820 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | || ||| ||| | |||||||| ||||||| ||| |||||||||||||| Sbjct 21812819 CCTTGCTTCCCATTGTCATTGCCATTGTAGCACGTGTGTGGCCTAGCCCATAAGGGCCAT 21812760 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 | |||||||||||||||||||||||||||| || | |||| Sbjct 21812759 GCGGACTTGACGTCATCCCCACCTTCCTCCAGTATCTCAC 21812720 >seq8 Length=22678724 Score = 91.5 bits (100), Expect = 1e-16 Identities = 108/145 (74%), Gaps = 1/145 (1%) Strand=Plus/Plus Query 3 GAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGGG 62 |||||||||| ||||||| | | | | ||||| || ||| ||||| ||| | | Sbjct 14314213 GAGTTGCAGAGAACAATCCAAATTGAGGCAATCTTTCCGG-ATTTGCTCCGCCTTACAGC 14314271 Query 63 TTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCATG 122 | || ||| ||| | | |||||| ||||||| |||| ||||||||||||||| Sbjct 14314272 CTTGCTTCCCATTGTCATTGCAATTGTAGCACGTGTGTGGCCCAGCCCATAAGGGCCATG 14314331 Query 123 AGGACTTGACGTCATCCCCACCTTC 147 |||||||||||||||||||||||| Sbjct 14314332 CGGACTTGACGTCATCCCCACCTTC 14314356 >seq6 Length=25711811 Score = 86.0 bits (94), Expect = 5e-15 Identities = 117/161 (73%), Gaps = 2/161 (1%) Strand=Plus/Minus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 ||||||||| | | ||| || ||| | | ||||| || ||| |||| ||| | | Sbjct 9553156 CGAGTTGCATAGAATAATTCGAACTGAGGCAATCTTTCCGG-ATTTGCTCTGCCTTACAG 9553098 Query 62 GTTGGCGGCCCTCTGTATGTACCAT-TGTATGACGTGTGAAGCCCTACCCATAAGGGCCA 120 | || ||| ||| | |||| ||| ||||||| |||| |||||||| |||| Sbjct 9553097 CCTTGCTTCCCATTGTCATTGCCATATGTCGCACGTGTGTGGCCCAGCCCATAAGTGCCA 9553038 Query 121 TGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 || |||||||||||||||||||||||||||| || | |||| Sbjct 9553037 TGCGGACTTGACGTCATCCCCACCTTCCTCCAGTATCTCAC 9552997 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 415999951640