Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20barthii_20[genbank_20GCA_5F000182155.3_202014-05-08] 12 sequences; 308,272,304 total letters Query= AAMG01001844.1 Length=290 Score E Sequences producing significant alignments: (Bits) Value seq11 118 2e-24 seq3 91.5 2e-16 >seq11 Length=23014695 Score = 118 bits (130), Expect = 2e-24 Identities = 110/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 151 GGGTTGAGCCCATAGTTTTCACATCTGACTTGCCTTCCCGCCTACACGCCCTTTACACCC 210 ||||||||||| | ||| || | |||||| || |||||| | |||||| ||| Sbjct 9335811 GGGTTGAGCCCTGGGATTTGACGGCGGACTTGAAAAGCCACCTACAGACGCTTTACGCCC 9335752 Query 211 AATAAATCCGGATAACGCTTGCCACCTACGTATTACCGCGGCTGCTGGCACGTAGTTAGC 270 ||| | |||||||||||||||| ||| || ||||||||||||||||||| ||||||| Sbjct 9335751 AATCATTCCGGATAACGCTTGCATCCTCTGTCTTACCGCGGCTGCTGGCACAGAGTTAGC 9335692 Query 271 CGTGGCTTATTCCTCAGGTA 290 || ||||||||||||| || Sbjct 9335691 CGATGCTTATTCCTCAGATA 9335672 >seq3 Length=33311619 Score = 91.5 bits (100), Expect = 2e-16 Identities = 79/98 (81%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 188 CCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACC 247 |||||||| ||||||||| | | | | |||| | ||| |||||| || || ||||| Sbjct 21811968 CCGCCTACGTGCCCTTTACGACTAGTCATTCCGAAGAACACTTGCCCCCCCTGTCTTACC 21811909 Query 248 GCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTC 285 ||||||||||||||| ||||||||| ||||| |||||| Sbjct 21811908 GCGGCTGCTGGCACGGAGTTAGCCGGGGCTTCTTCCTC 21811871 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 828799903652