Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20barthii_20[genbank_20GCA_5F000182155.3_202014-05-08] 12 sequences; 308,272,304 total letters Query= AAMG01002055.1 Length=294 Score E Sequences producing significant alignments: (Bits) Value seq6 86.0 1e-14 >seq6 Length=25711811 Score = 86.0 bits (94), Expect = 1e-14 Identities = 97/129 (75%), Gaps = 1/129 (1%) Strand=Plus/Minus Query 102 AAGGCTTCTTAGTGGAATTTCCACGTTGCCCACTCGCTTCATGCGTTTTTTACCGGCCTT 161 || ||||||| | ||||| || ||| || || ||||||||||| || || || | || Sbjct 2119558 AATGCTTCTT-GAGGAATATCAACGGACCCTACACGCTTCATGCGCTTCTTCCCTTCTTT 2119500 Query 162 TTGCTTCTCAAGCAGCTTGCGCTTACGGCTTACGTCACCGCCGTAGCATTTGGCCAGTAC 221 ||||||||| |||| ||| || || | | ||||| || ||||| |||||||| || Sbjct 2119499 TTGCTTCTCTAGCAACTTCTTTTTGCGAGTAATATCACCACCATAGCACTTGGCCAGAAC 2119440 Query 222 GTTCTTTCT 230 ||||||||| Sbjct 2119439 GTTCTTTCT 2119431 Score = 86.0 bits (94), Expect = 1e-14 Identities = 97/129 (75%), Gaps = 1/129 (1%) Strand=Plus/Minus Query 102 AAGGCTTCTTAGTGGAATTTCCACGTTGCCCACTCGCTTCATGCGTTTTTTACCGGCCTT 161 || ||||||| | ||||| || ||| || || ||||||||||| || || || | || Sbjct 2121980 AATGCTTCTT-GAGGAATATCAACGGACCCTACACGCTTCATGCGCTTCTTCCCTTCTTT 2121922 Query 162 TTGCTTCTCAAGCAGCTTGCGCTTACGGCTTACGTCACCGCCGTAGCATTTGGCCAGTAC 221 ||||||||| |||| ||| || || | | ||||| || ||||| |||||||| || Sbjct 2121921 TTGCTTCTCTAGCAACTTCTTTTTGCGAGTAATATCACCACCATAGCACTTGGCCAGAAC 2121862 Query 222 GTTCTTTCT 230 ||||||||| Sbjct 2121861 GTTCTTTCT 2121853 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 838399899392