Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20barthii_20[genbank_20GCA_5F000182155.3_202014-05-08] 12 sequences; 308,272,304 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq11 239 1e-60 seq2 194 4e-47 seq3 179 9e-43 seq4 165 2e-38 seq7 141 2e-31 seq5 116 9e-24 seq10 109 1e-21 >seq11 Length=23014695 Score = 239 bits (264), Expect = 1e-60 Identities = 286/387 (74%), Gaps = 30/387 (8%) Strand=Plus/Minus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 || || ||||| ||||||| | | |||||||||| ||| | |||||||| |||||||| Sbjct 9335641 TTGACGACCCGTGGGCCTTCCACCTCCACGCGGCATTGCTCCGTCAGGCTTTCGCCCATT 9335582 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124 | | || |||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct 9335581 GCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGT 9335522 Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCA 184 ||||| |||||||||| ||||||||| |||| |||||| ||| || ||| || | ||| Sbjct 9335521 GGCTGATCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATTGCCTCACCA 9335462 Query 185 ACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGG 244 ||||||||||| | | | | ||| | | | || | || || |||| Sbjct 9335461 ACTAGCTAATCAGACGCGAGCCCCTCC--TTGGG-------CGGATTTCTCC--TTTTGC 9335413 Query 245 TCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCA 304 || | | | || | ||||||||| |||||||||||| ||| | ||||||| |||| Sbjct 9335412 TCCTCAGCC--TACGGGGTATTAGCAACCGTTTCCAGTTGTTGTTCCCCTCCCAAGGGCA 9335355 Query 305 GTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTG 364 | ||| | | |||||||||||| ||||||| ||| || || |||| Sbjct 9335354 GGTTCTTACGCGTTACTCACCCGTTCGCCACT------GGAAACACCA-----CTTC--- 9335309 Query 365 TTACCGTTCGACTTGCATGTGTTAGGC 391 ||||||||||||||||||||| || Sbjct 9335308 ---CCGTTCGACTTGCATGTGTTAAGC 9335285 Score = 75.2 bits (82), Expect = 3e-11 Identities = 47/51 (92%), Gaps = 0/51 (0%) Strand=Plus/Plus Query 100 CTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTA 150 |||| |||||||||||| |||||||||||| |||||||||| ||||||||| Sbjct 16851498 CTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTA 16851548 >seq2 Length=31686972 Score = 194 bits (214), Expect = 4e-47 Identities = 142/165 (86%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 31 CACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCC 90 |||||||||| ||| |||||||||| ||||||||| | || |||||||||||||||||| Sbjct 5421232 CACGCGGCATTGCTCCATCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCT 5421291 Query 91 CGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTA 150 ||||||||||||| |||||||||||| |||||||| ||| ||||||||| ||||||||| Sbjct 5421292 CGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGACTGATCATCCTCTTGGACCAGCTA 5421351 Query 151 GGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGCTAATC 195 |||| |||||| ||| || ||| || | |||||||||||||| Sbjct 5421352 CTGATCATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAATC 5421396 >seq3 Length=33311619 Score = 179 bits (198), Expect = 9e-43 Identities = 156/193 (81%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 4 CTTTACAACCCGAA--GGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCC 61 |||||||| | | | | ||||||||| |||||| || |||| ||| ||||| ||||| Sbjct 21811836 CTTTACAAGCGGCATTGCCCTTCTTCACTCACGCGATATTGCTGGATCGGGCTTTCGCCC 21811777 Query 62 ATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 121 ||||| ||| |||||||||||||||| ||||| ||||||||| |||||||||||| |||| Sbjct 21811776 ATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCTGGGCCGTGTCTCAGTCCCAG 21811717 Query 122 TGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCG 181 |||||||| |||||| |||||||||| | ||| | | || ||| ||| |||||| Sbjct 21811716 TGTGGCTGATCATCCGAAAAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTTACCCGA 21811657 Query 182 CCAACTAGCTAAT 194 ||||||| ||||| Sbjct 21811656 CCAACTACCTAAT 21811644 >seq4 Length=27574323 Score = 165 bits (182), Expect = 2e-38 Identities = 153/193 (79%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 4 CTTTACAACCCGAA--GGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCC 61 |||||||| | | | | ||||||||| |||||| || |||| ||| ||||| ||||| Sbjct 25182119 CTTTACAAGCGGCATTGCCCTTCTTCACTCACGCGATATTGCTGGATCGGGCTTTCGCCC 25182178 Query 62 ATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 121 ||||| ||| |||||||||||||||| ||||| |||||| || |||||||||||| |||| Sbjct 25182179 ATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCCAG 25182238 Query 122 TGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCG 181 ||| |||| |||||| |||||||||| ||| | | || ||| ||| |||||| Sbjct 25182239 TGTAGCTGATCATCCGAAAAGACCAGCTAAACATCATTGGCTTGGTCAGCCTTTACCCGA 25182298 Query 182 CCAACTAGCTAAT 194 ||||||| ||||| Sbjct 25182299 CCAACTACCTAAT 25182311 >seq7 Length=24128185 Score = 141 bits (156), Expect = 2e-31 Identities = 114/138 (83%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 57 CGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGT 116 |||||||||| ||| |||||||||||||||| ||||| |||||| || |||||||||||| Sbjct 22005143 CGCCCATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGT 22005202 Query 117 TCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTA 176 |||||||||||| |||||| |||||||||| | ||| | | || ||| ||| ||| Sbjct 22005203 CCCAGTGTGGCTGATCATCCGAAAAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTTA 22005262 Query 177 CCCCGCCAACTAGCTAAT 194 ||| ||||||| ||||| Sbjct 22005263 CCCGACCAACTACCTAAT 22005280 Score = 131 bits (144), Expect = 4e-28 Identities = 125/160 (78%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 20 CCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCA 79 |||| |||| |||||| || |||| ||| ||||| |||||||||| ||| | |||||| Sbjct 11027395 CCTTATTCACTCACGCGATATTGCTGGATCGGGCTTTCGCCCATTGTCCAAGACTCCCCA 11027454 Query 80 CTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCT 139 |||||||| | ||| ||||| ||| | |||||| ||| | |||||||||| |||||| Sbjct 11027455 CTGCTGCCCCTCGTGGGAGTTTGGGCAGTGTCTAAGTCCTAGTGTGGCTGATCATCCGAA 11027514 Query 140 CAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCC 179 |||||||||| | ||| | | || ||| ||| |||||| Sbjct 11027515 AAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTTACCC 11027554 >seq5 Length=24206129 Score = 116 bits (128), Expect = 9e-24 Identities = 106/134 (79%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 34 GCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGT 93 ||||||| ||| | |||||||| | | ||||| | || ||| ||||||||||| |||||| Sbjct 4013094 GCGGCATTGCTCCGTCAGGCTTTCTCTCATTGCGGAAAATTTCCCACTGCTGCTTCCCGT 4013035 Query 94 AGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGG 153 |||||||||| ||||| ||||| |||||| |||| || |||||| ||||| ||| | Sbjct 4013034 AGGAGTCTGGGTCGTGTTTCAGTCTCAGTGTAGCTGATCGTCCTCTTAGACCGACTACTG 4012975 Query 154 ATCGTCGCCTAGGT 167 ||| | || | ||| Sbjct 4012974 ATCATTGCTTTGGT 4012961 Score = 75.2 bits (82), Expect = 3e-11 Identities = 64/79 (81%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 || || ||||| ||||||| | | |||||||||| ||| | |||||||| |||||||| Sbjct 20768240 TTGACGACCCGTGGGCCTTCCACCTCCACGCGGCATTGCTCCGTCAGGCTTTCGCCCATT 20768181 Query 65 GTGCAATATTCCCCACTGC 83 | | || |||||||||||| Sbjct 20768180 GCGGAAAATTCCCCACTGC 20768162 >seq10 Length=19274048 Score = 109 bits (120), Expect = 1e-21 Identities = 86/103 (83%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 || || ||||| ||||||| | | |||||||||| ||| | |||||||| |||||||| Sbjct 18769448 TTGACGACCCGTGGGCCTTCCACCTCCACGCGGCATTGCTCCGTCAGGCTTTCGCCCATT 18769389 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCG 107 | | || |||| ||||||||||||||||| ||||||||||||| Sbjct 18769388 GCGGAAAATTCTCCACTGCTGCCTCCCGTGGGAGTCTGGACCG 18769346 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1222399853312