Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20barthii_20[genbank_20GCA_5F000182155.3_202014-05-08] 12 sequences; 308,272,304 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq11 329 1e-87 seq3 251 2e-64 seq2 201 3e-49 seq4 179 1e-42 seq7 136 1e-29 seq5 111 5e-22 seq10 105 2e-20 >seq11 Length=23014695 Score = 329 bits (364), Expect = 1e-87 Identities = 280/343 (82%), Gaps = 3/343 (1%) Strand=Plus/Plus Query 160 CGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGAC 219 |||||||||||||||||||||| ||| || |||||||||||||| |||||||||| | Sbjct 9335444 CGCGTCTGATTAGCTAGTTGGTGAGGCAATAGCTTACCAAGGCGATGATCAGTAGCTGGT 9335503 Query 220 CTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAG 279 | |||||| ||||| |||||| ||| |||||||||||| ||| ||||||||||||||||| Sbjct 9335504 CCGAGAGGATGATCAGCCACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAG 9335563 Query 280 CAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGA 339 ||||||||||| || | |||||||| ||||||||| | ||||| |||||||| | || Sbjct 9335564 CAGTGGGGAATTTTCCGCAATGGGCGAAAGCCTGACGGAGCAATGCCGCGTGGAGGTGGA 9335623 Query 340 AGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAG--ATAATGACGGTACTTGAGGAGG 397 ||||| |||||||| || ||| | ||| |||| | |||||||||| |||||| Sbjct 9335624 AGGCCCACGGGTCGTCAACTTCTTTTCTCGGAGAAGAAACAATGACGGTATCTGAGGAAT 9335683 Query 398 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 457 |||| ||||||||| ||||||||||||||||||| || ||| || ||||||||||| Sbjct 9335684 AAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAAGACAGAGGATGCAAGCGTTATCCG 9335743 Query 458 GAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 |||| | | |||||||||| || |||||||| || | ||||| Sbjct 9335744 GAATGA-TTGGGCGTAAAGCGTCTGTAGGTGGCTTTTCAAGTC 9335785 >seq3 Length=33311619 Score = 251 bits (278), Expect = 2e-64 Identities = 254/327 (78%), Gaps = 5/327 (2%) Strand=Plus/Plus Query 168 ATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAGG 227 ||||| |||||||| ||||| |||| |||||| | | ||| |||| | || || Sbjct 21811644 ATTAGGTAGTTGGTCGGGTAAAGGCTGACCAAGCCAATGATGCTTAGCTGGTCTTTTCGG 21811703 Query 228 GTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGG 287 ||||| |||||| ||| |||||||||||| ||| ||||| ||||| ||||||||||||| Sbjct 21811704 ATGATCAGCCACACTGGGACTGAGACACGGCCCAGACTCCCACGGGGGGCAGCAGTGGGG 21811763 Query 288 AATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCC--T 345 ||| ||| ||||||||| |||||| ||| |||||| |||||||| || ||||| | | Sbjct 21811764 AATCTTGGACAATGGGCGAAAGCCCGATCCAGCAATATCGCGTGAGTGAAGAAGGGCAAT 21811823 Query 346 TCGGGTCGTAAAGCTCTGTCCTCAA--GGAAGATAATGACGGTACTTGAGGAGGAAGCCC 403 | | | |||||||||| || || | | ||| ||||| ||| ||||| ||||||| Sbjct 21811824 GCCGCTTGTAAAGCTCTTTCGTCGAGTGCGCGATCATGACAAGACTCGAGGAAGAAGCCC 21811883 Query 404 CGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTA 463 ||||||||| |||||||||||||||||||| || |||||| || ||| | |||||| | Sbjct 21811884 CGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACAGGGGGGGCAAGTGTTCTTCGGAATGA 21811943 Query 464 CTGGGGCGTAAAGGGTGCGTAGGTGGT 490 || | ||||||||| |||||| ||| Sbjct 21811944 CT-AGTCGTAAAGGGCACGTAGGCGGT 21811969 >seq2 Length=31686972 Score = 201 bits (222), Expect = 3e-49 Identities = 147/171 (86%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 161 GCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACC 220 ||||||||||||||||||||| ||| || |||||||||||||| |||||||||| | | Sbjct 5421402 GCGTCTGATTAGCTAGTTGGTGAGGCAATAGCTTACCAAGGCGATGATCAGTAGCTGGTC 5421343 Query 221 TGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGC 280 ||||| ||||| | |||| ||| |||||||||||| ||| ||||||||| |||||||| Sbjct 5421342 CAAGAGGATGATCAGTCACACTGGGACTGAGACACGGCCCAGACTCCTACGAGAGGCAGC 5421283 Query 281 AGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTG 331 |||||||||| || | |||||||| ||||||||||| ||||| |||||||| Sbjct 5421282 AGTGGGGAATTTTCCGCAATGGGCGAAAGCCTGATGGAGCAATGCCGCGTG 5421232 >seq4 Length=27574323 Score = 179 bits (198), Expect = 1e-42 Identities = 191/250 (76%), Gaps = 4/250 (2%) Strand=Plus/Minus Query 168 ATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAGG 227 ||||| |||||||| ||||| |||| |||||| | | ||| |||| | || || Sbjct 25182311 ATTAGGTAGTTGGTCGGGTAAAGGCTGACCAAGCCAATGATGTTTAGCTGGTCTTTTCGG 25182252 Query 228 GTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGG 287 ||||| || ||| ||| |||||||||||| || ||||| ||||| ||||||||||||| Sbjct 25182251 ATGATCAGCTACACTGGGACTGAGACACGGCCCGGACTCCCACGGGGGGCAGCAGTGGGG 25182192 Query 288 AATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCC--T 345 ||| ||| ||||||||| |||||| ||| |||||| |||||||| || ||||| | | Sbjct 25182191 AATCTTGGACAATGGGCGAAAGCCCGATCCAGCAATATCGCGTGAGTGAAGAAGGGCAAT 25182132 Query 346 TCGGGTCGTAAAGCTCTGTCCTCAA--GGAAGATAATGACGGTACTTGAGGAGGAAGCCC 403 | | | |||||||||| || || | | ||| ||||| | ||| ||||| ||||||| Sbjct 25182131 GCCGCTTGTAAAGCTCTTTCGTCGAGTGCGCGATCATGACAGGACTCGAGGAAGAAGCCC 25182072 Query 404 CGGCTAACTA 413 ||||||| || Sbjct 25182071 CGGCTAAATA 25182062 >seq7 Length=24128185 Score = 136 bits (150), Expect = 1e-29 Identities = 178/244 (73%), Gaps = 7/244 (3%) Strand=Plus/Minus Query 184 GGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAGGGTGATCGGCCACATTG 243 ||||| |||| |||||| | | ||| |||| | || || ||||| |||||| | Sbjct 11027553 GGTAAAGGCTGACCAAGCCAATGATGCTTAGCTGGTCTTTTCGGATGATCAGCCACACTA 11027494 Query 244 GAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGG 303 | ||| |||||| | ||||||||| ||| | |||||||||||||| | ||| |||||||| Sbjct 11027493 GGACTTAGACACTGCCCAAACTCCCACGAGGGGCAGCAGTGGGGAGTCTTGGACAATGGG 11027434 Query 304 CAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCC--TTCGGGTCGTAAAGCTC 361 | |||||| ||| |||||| |||||||| || |||| | | | | ||||||||| Sbjct 11027433 CGAAAGCCCGATCCAGCAATATCGCGTGAGTGAATAAGGGCAATGCCACTTGTAAAGCTC 11027374 Query 362 TGTCCTCAA--GGAAGATAATGACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCC 419 | || || | | ||| ||||| ||| ||||| |||||| |||||| ||||| Sbjct 11027373 TTTCTTCGAGTGTGCGATCATGACATGACTCGAGGAAGAAGCCACGGCTA---CCGTGCT 11027317 Query 420 AGCA 423 |||| Sbjct 11027316 AGCA 11027313 Score = 120 bits (132), Expect = 9e-25 Identities = 117/151 (77%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 157 ACCCGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCC 216 ||| |||| ||||| |||||||| ||||| |||| |||||| | | ||| |||| Sbjct 22005291 ACCTGCGTAGTATTAGGTAGTTGGTCGGGTAAAGGCTGACCAAGCCAATGATGCTTAGCT 22005232 Query 217 GACCTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGG 276 | || || ||||| |||||| ||| |||||||||||| || ||||| ||||| || Sbjct 22005231 GGTCTTTTCGGATGATCAGCCACACTGGGACTGAGACACGGCCCGGACTCCCACGGGGGG 22005172 Query 277 CAGCAGTGGGGAATATTGCACAATGGGCAAA 307 |||||||||||||| ||| ||||||||| || Sbjct 22005171 CAGCAGTGGGGAATCTTGGACAATGGGCGAA 22005141 >seq5 Length=24206129 Score = 111 bits (122), Expect = 5e-22 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 195 ACCAAGGCGACGATCAGTAGCCGACCTGAGAGGGTGATCGGCCACATTGGAACTGAGACA 254 ||||| || | ||||||||| || || ||||| |||| || ||| || ||||| ||| Sbjct 4012961 ACCAAAGCAATGATCAGTAGTCGGTCTAAGAGGACGATCAGCTACACTGAGACTGAAACA 4013020 Query 255 CGGTCCAAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGA 314 || ||| |||||||||||| ||||||||||| ||| || | ||||| | ||||||||| Sbjct 4013021 CGACCCAGACTCCTACGGGAAGCAGCAGTGGGAAATTTTCCGCAATGAGAGAAAGCCTGA 4013080 Query 315 TGCAGCAACGCCGC 328 | ||||| ||||| Sbjct 4013081 CGGAGCAATGCCGC 4013094 Score = 93.3 bits (102), Expect = 1e-16 Identities = 96/125 (77%), Gaps = 2/125 (2%) Strand=Plus/Plus Query 279 GCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATG 338 |||||||||||| || | |||||||| ||||||||| | ||||| |||||||| | | Sbjct 20768162 GCAGTGGGGAATTTTCCGCAATGGGCGAAAGCCTGACGGAGCAATGCCGCGTGGAGGTGG 20768221 Query 339 AAGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAG--ATAATGACGGTACTTGAGGAG 396 |||||| |||||||| || ||| | ||| |||| | |||||||||| |||||| Sbjct 20768222 AAGGCCCACGGGTCGTCAACTTCTTTTCTCGGAGAAGAAACAATGACGGTATCTGAGGAA 20768281 Query 397 GAAGC 401 |||| Sbjct 20768282 TAAGC 20768286 >seq10 Length=19274048 Score = 105 bits (116), Expect = 2e-20 Identities = 85/103 (83%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 255 CGGTCCAAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGA 314 ||||||| ||||| ||||||||||||||||| |||| || | |||||||| ||||||||| Sbjct 18769346 CGGTCCAGACTCCCACGGGAGGCAGCAGTGGAGAATTTTCCGCAATGGGCGAAAGCCTGA 18769405 Query 315 TGCAGCAACGCCGCGTGAGCGATGAAGGCCTTCGGGTCGTAAA 357 | ||||| |||||||| | ||||||| |||||||| || Sbjct 18769406 CGGAGCAATGCCGCGTGGAGGTGGAAGGCCCACGGGTCGTCAA 18769448 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1497599820288