Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20barthii_20[genbank_20GCA_5F000182155.3_202014-05-08] 12 sequences; 308,272,304 total letters Query= AAMG01002183.1 Length=408 Score E Sequences producing significant alignments: (Bits) Value seq3 132 1e-28 seq11 120 7e-25 seq2 120 7e-25 >seq3 Length=33311619 Score = 132 bits (146), Expect = 1e-28 Identities = 121/153 (79%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 185 AGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAA 244 ||||||||| | |||||| |||||||| ||||||| | | |||||| ||| ||||| Sbjct 21812162 AGTGGAATTTCGTGTGTAGGGGTGAAATCCGTAGATCTACGAAGGAACGCCAAAAGCGAA 21812221 Query 245 GGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATT 304 ||| ||| |||| || ||| ||| || ||||||| |||||||| ||||||||| Sbjct 21812222 GGCAGCTCTCTGGGTCCCTACCGACGCTGGGGTGCGAAAGCATGGGGAGCGAACAGGATT 21812281 Query 305 AGATACCCTGGTAGTCCACGCCGTAAACGATGA 337 |||||||||||||||||| ||| |||| ||||| Sbjct 21812282 AGATACCCTGGTAGTCCATGCCATAAATGATGA 21812314 Score = 109 bits (120), Expect = 1e-21 Identities = 86/103 (83%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 2 ACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCT 61 ||| ||||| |||||||||||||||| |||||||||||||||||||| || |||||| Sbjct 21811867 ACTCGAGGAAGAAGCCCCGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACAGGGGGGGCA 21811926 Query 62 AGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGT 104 || ||| | |||||| ||| | ||||||||| |||||| ||| Sbjct 21811927 AGTGTTCTTCGGAATGACTAGTCGTAAAGGGCACGTAGGCGGT 21811969 >seq11 Length=23014695 Score = 120 bits (132), Expect = 7e-25 Identities = 110/139 (79%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 5 TGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGC 64 |||||| |||| ||||||||| ||||||||||||||||||| || ||| || ||| Sbjct 9335676 TGAGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAAGACAGAGGATGCAAGC 9335735 Query 65 GTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAA 124 |||||||||||| | ||||||||||| || |||||||| || | ||||| | || ||| Sbjct 9335736 GTTATCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTCAAGTCCGCCGTCAAA 9335795 Query 125 GGCTATGGCTCAACCCCGG 143 | | |||||||||| || Sbjct 9335796 TCCCAGGGCTCAACCCTGG 9335814 >seq2 Length=31686972 Score = 120 bits (132), Expect = 7e-25 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 202 AGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTGCTGGACTG 261 || |||||||| ||||||| | | |||||| ||| ||||||| ||| |||| Sbjct 1123193 AGGGGTGAAATCCGTAGATCTACGAAGGAACGCCAAAAGCGAAGGTAGCTCTCTGGGTCC 1123252 Query 262 TAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCC 321 || ||| ||| || ||||||| |||||||| |||||||||||||||||||||||||| Sbjct 1123253 CTACCGACGCTGGGGTGCGAAAGCATGGGGAGCGAACAGGATTAGATACCCTGGTAGTCC 1123312 Query 322 ACGCCGTAAACGATGA 337 | |||||||||||||| Sbjct 1123313 ATGCCGTAAACGATGA 1123328 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203199855616