Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20barthii_20[genbank_20GCA_5F000182155.3_202014-05-08] 12 sequences; 308,272,304 total letters Query= AAMG01002193.1 Length=560 Score E Sequences producing significant alignments: (Bits) Value seq10 123 8e-26 seq1 116 1e-23 seq6 111 5e-22 seq8 107 6e-21 seq4 93.3 1e-16 >seq10 Length=19274048 Score = 123 bits (136), Expect = 8e-26 Identities = 121/155 (78%), Gaps = 1/155 (1%) Strand=Plus/Plus Query 35 GACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAG-GTGCGGTAACACGCCCTGGA 93 ||||||||||| | |||||| ||||| |||| ||||| | || ||||| ||| |||| Sbjct 5033350 GACCCGAAACCGATCGATCTAGCCATGAGCAGGTTGAAGAGAGCTCTAACAGGCCTTGGA 5033409 Query 94 GGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCT 153 || |||||||||| |||| | ||||| |||||||| ||||| || ||||||||||| Sbjct 5033410 GGACCGAACCCACGTATGTGGCAAAATACGGGGATGACTTGTGGCTATGGGTGAAAGGCC 5033469 Query 154 AAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAA 188 || ||| | ||| |||||||||| || ||| || Sbjct 5033470 AACCAAGATCGGATATAGCTGGTTTTCCGCGAGAA 5033504 >seq1 Length=36915442 Score = 116 bits (128), Expect = 1e-23 Identities = 164/224 (73%), Gaps = 6/224 (3%) Strand=Plus/Plus Query 336 CGAGAGGAGAAGAATCCGGACTATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTA 395 ||||||| || | |||| | ||||||||||||| ||||||| ||| ||| | | | Sbjct 450513 CGAGAGGTAAACAGCCCGGGTCACCAGCTAAGGCCCCTAAATGACCGCTCAGTGATA--A 450570 Query 396 ACGAAGTCTGATTGCTAAGACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAG 455 | || || | ||| |||||||| |||| ||| || | |||||||||| | ||||||| Sbjct 450571 AGGAGGTGGGGGTGCAAAGACAGCCAGGAAGTTTGCCTAGAAGCAGCCACCC-TTTAAAG 450629 Query 456 AGTGCGTAACAGCTCACTAGTCGAGGAGTCGGGCGTGGATAATAATCGGGTATTAAGTTG 515 ||||||||| |||||||| ||||| | ||| || || | |||| |||| Sbjct 450630 AGTGCGTAATAGCTCACTGATCGAGCGCCCTTGCGCTGAAGATGAACGGG-GCTAAGCGA 450688 Query 516 TCTACCGAAGCAGTGGGATCATTTATATG-ATCGGTAGGGGAGC 558 ||| ||||||| ||||||| | | ||| |||||||||||||| Sbjct 450689 TCTGCCGAAGCTGTGGGAT-GTCAAAATGCATCGGTAGGGGAGC 450731 >seq6 Length=25711811 Score = 111 bits (122), Expect = 5e-22 Identities = 136/186 (73%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 2 CGAGTCCGAACAGGGCGACAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCATG 61 |||||| | ||||||| || ||| | | |||||||| | |||||||| ||||| Sbjct 7175302 CGAGTCTTCATAGGGCGATTGTNACTGCTTATGGACCCGAACCTGGGTGATCTATCCATG 7175361 Query 62 GCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAATT 121 ||||||||||| | | | | || |||||||||||| ||| ||||| || ||| Sbjct 7175362 ACCAGGATGAAGCTTGGATGAAACTAAGCAGAGGTCCGAACCGACTGATGTTCAAGAATC 7175421 Query 122 AGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTCT 181 | ||||||| ||||| ||||||||||| || | | ||| || |||||||||||| Sbjct 7175422 AACGGATGAGTTGTGGTTAGGGGTGAAATGCCACTCGAACCCAGAGCTAGCTGGTTCTCC 7175481 Query 182 CCGAAA 187 |||||| Sbjct 7175482 CCGAAA 7175487 >seq8 Length=22678724 Score = 107 bits (118), Expect = 6e-21 Identities = 112/145 (77%), Gaps = 3/145 (2%) Strand=Plus/Plus Query 336 CGAGAGGAGAAGAATCCGGACTATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTA 395 ||||||| || | ||||| | ||||||||||||| ||||||| ||| ||| | | | Sbjct 2032642 CGAGAGGGAAACAGCCCGGATCACCAGCTAAGGCCCCTAAATGACCGCTCAGTGATA--A 2032699 Query 396 ACGAAGTCTGATTGCTAAGACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAG 455 | || || | ||| |||||||| |||| ||| || | |||||||||| | ||||||| Sbjct 2032700 AGGAGGTGGGGGTGCAAAGACAGCCAGGAGGTTTGCCTAGAAGCAGCCA-CCCTTTAAAG 2032758 Query 456 AGTGCGTAACAGCTCACTAGTCGAG 480 ||||||||| |||||||| ||||| Sbjct 2032759 AGTGCGTAATAGCTCACTGATCGAG 2032783 >seq4 Length=27574323 Score = 93.3 bits (102), Expect = 1e-16 Identities = 111/151 (74%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 2 CGAGTCCGAACAGGGCGACAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCATG 61 |||||| | ||||||| ||| ||| | | |||||||| | |||||||| |||| Sbjct 6183742 CGAGTCTTCATAGGGCGATTGTCACTGCTTATGGACCCGAACCTGGGTGATCTATACATG 6183801 Query 62 GCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAATT 121 || |||||||| | | | | || ||||||||||| ||| |||||||| ||| Sbjct 6183802 ACCTGGATGAAGCTTGGATGAAACTAAGCANAGGTCCGAACCGACTGATGTTGAAGAATC 6183861 Query 122 AGGGGATGAGCTGTGGGTAGGGGTGAAAGGC 152 || ||||||| ||||| ||||||||||| || Sbjct 6183862 AGCGGATGAGTTGTGGTTAGGGGTGAAATGC 6183892 Score = 91.5 bits (100), Expect = 5e-16 Identities = 103/136 (76%), Gaps = 3/136 (2%) Strand=Plus/Plus Query 336 CGAGAGGAGAAGAATCCGGACTATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTA 395 ||||||| || | ||||| | ||||||||||||| ||||||| ||| ||| | | | Sbjct 8648105 CGAGAGGGAAACAGCCCGGATCACCAGCTAAGGCCCCTAAATGACCGCTCAGTGATA--A 8648162 Query 396 ACGAAGTCTGATTGCTAAGACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAG 455 | || || | ||| |||||||| |||| ||| || | |||||||||| | ||||||| Sbjct 8648163 AGGAGGTGGGGGTGCAAAGACAGCCAGGAGGTTTGCCTAGAAGCAGCCA-CCCTTTAAAG 8648221 Query 456 AGTGCGTAACAGCTCA 471 ||||||| | | |||| Sbjct 8648222 AGTGCGTTATATCTCA 8648237 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1689599797248