Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20barthii_20[genbank_20GCA_5F000182155.3_202014-05-08] 12 sequences; 308,272,304 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq7 152 2e-34 seq6 132 2e-28 seq2 93.3 1e-16 >seq7 Length=24128185 Score = 152 bits (168), Expect = 2e-34 Identities = 108/124 (87%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 9 TTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATGGT 68 |||| || ||| ||||||||||||||| |||| | |||||||||||||| |||| | Sbjct 9737070 TTTGTTCCACACGAGATTTCTGTTCTCGTTGAGCTCATCTTAGGACACCTGCATTATCTT 9737129 Query 69 TTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATCGG 128 ||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| Sbjct 9737130 TTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCCGCCCGGATCGG 9737189 Query 129 CCCG 132 | || Sbjct 9737190 CTCG 9737193 >seq6 Length=25711811 Score = 132 bits (146), Expect = 2e-28 Identities = 185/252 (73%), Gaps = 13/252 (5%) Strand=Plus/Minus Query 292 CTCAACAGGGTC-TTCTTTCCCCGCTGATTCCGCCAAGCCCG---TTCCCTTGGCTGT-G 346 || || |||||| |||||||| ||||||||||| |||| | | || | | || || | Sbjct 6114122 CTTAATAGGGTCATTCTTTCCTCGCTGATTCCGTCAAGGCGGCTATTTCTTCCGCCGTTG 6114063 Query 347 GTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCAC 406 |||||| ||||||||| || |||| || || ||| ||||||| |||||| || ||||| Sbjct 6114062 GTTTCGTTAGATAGTAATCAGTGACAATGAGAGTCTTGTTAATCTATTCATACGTGTCAC 6114003 Query 407 TAATTAGAT--GACGAGGCATTTGGCTACCTTA-AGAGAGTC-ATAGTTACTCCCGCCGT 462 |||||||| || ||| |||||| || |||| | | || ||||||||||| ||||| Sbjct 6114002 AAATTAGATAAGATAAGGTATTTGGTTATCTTATAAATCGTTTATAGTTACTCCTGCCGT 6113943 Query 463 TTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACA 522 |||| | || || | ||||| |||| ||| ||| | || || || |||||| | Sbjct 6113942 TTACGCACGGTTCATCAAATTTATTCATTTTAACAGTTGGA----AGGACAAAAATCATA 6113887 Query 523 TTGCGTCAACAT 534 ||| || | ||| Sbjct 6113886 TTGTGTTAGCAT 6113875 >seq2 Length=31686972 Score = 93.3 bits (102), Expect = 1e-16 Identities = 116/156 (74%), Gaps = 5/156 (3%) Strand=Plus/Plus Query 195 aaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTATTCTACAC 254 || |||| ||| ||| || || |||||||| | | | |||| ||||||||||||||| Sbjct 8834705 AATAACGTTAAAAGTAATGATACTTCACTTGTGA-GCGAGGGCTTCCACTTATTCTACAC 8834763 Query 255 CTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCG 314 |||||| | | | |||| || || |||||||||||| || |||||| || | Sbjct 8834764 CTCTCAGAAAAGCTTATGAAGTTGGTTTAAAGTCAAGCTCAA---AGTTTTCTTTTCCTG 8834820 Query 315 CTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTT 350 ||||||| | ||||||| || | || |||||||||| Sbjct 8834821 CTGATTCTGTCAAGCCCATT-CTTTAGCTGTGGTTT 8834855 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635199803776