Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20barthii_20[genbank_20GCA_5F000182155.3_202014-05-08] 12 sequences; 308,272,304 total letters Query= AAMG01002207.1 Length=564 Score E Sequences producing significant alignments: (Bits) Value seq5 134 5e-29 seq3 134 5e-29 seq6 80.6 9e-13 >seq5 Length=24206129 Score = 134 bits (148), Expect = 5e-29 Identities = 86/94 (91%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 386 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAT 445 |||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 20767913 TCGTTACGCCTTTCGTGCAGGTCGGAACTTACTCGACAAGGAATTTCGCTACCTTAGGAC 20767854 Query 446 GGTTATAGTTACCACCGCCGTTTACTGGGGCTTC 479 ||||||||||| |||||||| || |||||||| Sbjct 20767853 CGTTATAGTTACGGCCGCCGTTCACCGGGGCTTC 20767820 >seq3 Length=33311619 Score = 134 bits (148), Expect = 5e-29 Identities = 86/94 (91%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 386 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAT 445 |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 25165555 TCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAC 25165496 Query 446 GGTTATAGTTACCACCGCCGTTTACTGGGGCTTC 479 ||||||||||| |||||||| || |||||||| Sbjct 25165495 CGTTATAGTTACGGCCGCCGTTCACCGGGGCTTC 25165462 >seq6 Length=25711811 Score = 80.6 bits (88), Expect = 9e-13 Identities = 53/59 (90%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 386 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 444 ||||||| || || ||| |||| ||||||||||||||||||||||||||||||||||| Sbjct 14856424 TCGTTACACCTTTTGTGTGGGTCAGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 14856366 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1702399795712