Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20barthii_20[genbank_20GCA_5F000182155.3_202014-05-08] 12 sequences; 308,272,304 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq6 150 1e-31 >seq6 Length=25711811 Score = 150 bits (166), Expect = 1e-31 Identities = 543/840 (65%), Gaps = 17/840 (2%) Strand=Plus/Minus Query 61099 TACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATG 61158 ||||| ||||||| || || |||||||||| ||||||||| || | ||| ||| | Sbjct 7421327 TACAAGAAGGCGGTGGCGTCGTTCTGGACGGCGGAGGAGGTGGACCTCTCCGCCGACGCG 7421268 Query 61159 AATGACTGGGA----GCGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGC 61214 ||||||| ||| | || || || | || ||||| || ||| | || Sbjct 7421267 CGCCACTGGGACGCCGCGCTG-TCCCCCGACGAGCGCCACTTCATCTCCCACGTGCTCGC 7421209 Query 61215 GTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGA 61274 ||||| ||||| || ||||| ||||| ||||| | | ||| | || Sbjct 7421208 CTTCTTCGCCGCCTCCGACGGCATCGTGCTCGAGAACCTCGCCTCCAGGTTCATGTCCGA 7421149 Query 61275 GGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCA 61334 ||||| || | ||||| || ||||||||||||||||| ||||| ||||| |||| Sbjct 7421148 CGTGCAGGTCGCCGAGGCTCGCGCCTTCTACGGCTTCCAGATCGCCATCGAGAACATCCA 7421089 Query 61335 CTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACG 61394 ||| ||||||||| | || |||| || |||||| | || | || || || || Sbjct 7421088 CTCCGAGATGTACTCGCTGCTGCTCGAGACCTACATCCGCGACGGCGCCGAGAAGGACCG 7421029 Query 61395 ATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAA 61454 ||||| |||||||| || | ||||| ||| || || || || |||||| | Sbjct 7421028 GCTGTTCCGCGCCATCGACACCGTCCCGGCCGTGCGCCGCAAGGCCGACTGGGCCATGCG 7420969 Query 61455 TTGGATCACCAGT-ACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCG 61513 |||||| | || | | || || | || || | | || || || |||| Sbjct 7420968 CTGGATCGACGGTGGCGAGCGC----TTCGCCGAGCGCCTCGTCGCCTTCGCCTGCGTCG 7420913 Query 61514 AGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTA 61573 |||| | || ||| || || || ||| ||||| ||| | ||||| || || || | Sbjct 7420912 AGGGGATCTTCTTCTCGGGCTCCTTCTGCGCCATCTTCTGGCTCAAGAAGCGGGGGCTCA 7420853 Query 61574 TGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATT 61633 |||| || || |||||| ||| ||| | || || |||||||||||| |||| || || | Sbjct 7420852 TGCCGGGCCTCACCTTCTCCAACGAGCTCATCTCCCGCGACGAGGGCCTGCACTGCGACT 7420793 Query 61634 TTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTG 61693 | || | || | | | | | || | | | | || | |||| ||| || | | Sbjct 7420792 TCGCCTGCCTCCTCTACGACCTC-CTCCGCGGCA-AGCTCGAC-GAGGCGCGCGTCCGCG 7420736 Query 61694 AGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATT--TCTGACTGACGCTTTGCCCGT 61751 |||| || || || || ||||| ||| || |||| ||||| | ||||| Sbjct 7420735 AGATCGTCGCCGACGCCGTCGACATCGAGAGGGAGTTCGTCTG--CGACGCGCTCCCCGT 7420678 Query 61752 CTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCG 61811 | | ||| |||||||||| | | || ||| ||||| || ||||| || |||||||| Sbjct 7420677 CGCGCTCGTCGGCATGAACGGCGACCTCATGAGCCAGTACATCGAATTCGTCGCCGACCG 7420618 Query 61812 TCTGTTGGTCGATTTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGATTTCAT 61871 || | | | | || ||| ||| || || ||||| || || | || Sbjct 7420617 CCTCCTCATGGCACTCGGCTGCAAGAAGATGTACAACGTCGCCAACCCCTTCGACTGGAT 7420558 Query 61872 GGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTATCA 61931 ||| | || || ||| | |||||||| || || |||||||| || || |||||||| || Sbjct 7420557 GGAGCTCATCTCCCTGCAGGGCAAGACCAACTTCTTCGAGAAGCGCGTCGGCGACTACCA 7420498 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397567941855680