Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20barthii_20[genbank_20GCA_5F000182155.3_202014-05-08] 12 sequences; 308,272,304 total letters Query= NC_031903.1 Length=172345 Score E Sequences producing significant alignments: (Bits) Value seq10 609 3e-169 seq2 96.9 4e-15 >seq10 Length=19274048 Score = 609 bits (674), Expect = 3e-169 Identities = 720/975 (74%), Gaps = 15/975 (2%) Strand=Plus/Plus Query 159816 TAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTCCTGATGATCCCAACTC 159875 ||||| ||| | ||||| || || | || ||||| || || |||||||||| || Sbjct 17610091 TAACTAGCACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCT 17610150 Query 159876 TGTTGGCAGCAACTATCTGC-TTCATCGTCGCCTTCATCGCTGCTCCCCCTGTGGACATC 159934 | ||| | |||||| |||| || || |||||||||||||||| || || || || || Sbjct 17610151 TATTGACCGCAACT-TCTGTATTTATTATCGCCTTCATCGCTGCCCCTCCAGTAGATATT 17610209 Query 159935 GATGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTACGGTAACAACATCATCTCTGGT 159994 ||||| || ||||| || || ||||||| | | ||||| ||||| || ||||||||| Sbjct 17610210 GATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTACGGAAACAATATTATCTCTGGT 17610269 Query 159995 GCAGTTGTTCCCTCTTCCAACGCAATTGGTCTTCACTTCTATCCCATTTGGGAAGCCGCA 160054 | ||||||| |||| || | || | ||||| || || ||||||||||| ||| Sbjct 17610270 ACCATTGTTCCTACTTCTGCTGCGGTCGGATTGCACTTTTACCCAATTTGGGAAGCTGCA 17610329 Query 160055 TCGCTCGACGAGTGGCTCTATAACGGTGGTCCTTTCCAACTCGTAGTCTTCCACTTCCTG 160114 || | || |||||| | || || || ||||||| | || | || | |||||| | Sbjct 17610330 TCTGTTGATGAGTGGTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTA 17610389 Query 160115 ATCGGCATCTATGCCTATATGGGTCGTGAGTGGGAACTCTCTTACCGTCTCGGTATGCGT 160174 | || | | ||||||||||||||||||||||| || |||||| ||||||||| Sbjct 17610390 CTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTATGCGT 17610449 Query 160175 CCCTGGATCTGTGTTGCATACTCTGCTCCAGTCGCTGCTGCTTCTGCTGTATTCCTCGTC 160234 || ||||| ||||||||| || ||||| || || |||||| ||||||| ||| | | Sbjct 17610450 CCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATT 17610509 Query 160235 TACCCCTTCGGTCAGGGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTT 160294 ||||| | ||||| || ||||| |||| ||||||| | || || ||||||||||| Sbjct 17610510 TACCCTATTGGTCAAGGAAGTTTCTTTGATGGTATGCCTTTAGGAATATCTGGTACTTTC 17610569 Query 160295 AACTATATGCTTGTATTCCAAGCAGAACACAATATCCTTATGCATCCGTTCCACATGCTC 160354 |||| |||| |||||||||| ||||| || || |||||||||||||| || |||||| | Sbjct 17610570 AACTTTATGATTGTATTCCAGGCAGAGCATAACATCCTTATGCATCCATTTCACATGTTA 17610629 Query 160355 GGTGTTGCTGGGGTATTCGGTGGATCTCTGTTCTCTGCTATGCATGGATCTCTGGTTACT 160414 ||||| ||||| |||||||| || || || ||| |||||||||||| | |||| || Sbjct 17610630 GGTGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTGCTTGGTAACC 17610689 Query 160415 TCTAGTCTCGTCAGAGAGACGACAGAAACTGAGTCCCAGAACTATGGTTACAAGTTCGGT 160474 |||||| | |||| || || || |||| || || || | ||||||| || ||| Sbjct 17610690 TCTAGTTTGATCAGGGAAACCACTGAAAACGAATCTGCTAATGAGGGTTACAGATTTGGT 17610749 Query 160475 CAAGAGGAAGAGACTTACAACATCGTCGCAGCACATGGCTACTTCGGTCGTTTGATCTTC 160534 ||||||||||||||||| || || || || || ||||| || |||||| Sbjct 17610750 CAAGAGGAAGAGACTTATAATATTGTGGCCGCTCATGG-------------TTAATCTTC 17610796 Query 160535 CAATATGCATCCTTTAACAACTCACGCTCTCTGCACTTCTTCCTCGCTGCTTGGCCTGTT 160594 |||||||| ||||||||||| || ||| | ||||||||| | | |||||||||||| Sbjct 17610797 CAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGATGCTTGGCCTGTA 17610856 Query 160595 GTTGGAATCTGGTTCACTGCCCTTGGTGTTTCTACCATGGCATTCAATCTCAATGGTTTC 160654 || || || ||||||||||| | ||| || ||| ||||| |||||||| || || ||| Sbjct 17610857 GTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAATCTAAACGGATTC 17610916 Query 160655 AACTTCAACCAGTCCATCTTGGACAACCAAGGACAAGTTCTGAACACTTGGGCAGACGTG 160714 || |||||||| || | | || | |||||| | ||| | || |||||||| || | Sbjct 17610917 AATTTCAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGATATC 17610976 Query 160715 CTTAACCGCGCTGGTCTGGGCATGGAAGTCATGCACGAGCGTAACGCTCACAACTTCCCT 160774 | ||||| ||| ||| || |||||||| |||||||| ||| | ||||||||||||||| Sbjct 17610977 ATCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTTATGCTCACAACTTCCCT 17611036 Query 160775 CTCGACCTTGCTGCT 160789 || ||||| ||| || Sbjct 17611037 CTAGACCTAGCTACT 17611051 >seq2 Length=31686972 Score = 96.9 bits (106), Expect = 4e-15 Identities = 123/168 (73%), Gaps = 1/168 (1%) Strand=Plus/Minus Query 160601 ATCTGGTTCACTGCCCTTGGTGTTTCTACCATGGCATTCAATCTCAATGGTTTCAACTTC 160660 || ||||||||||| | ||| || || ||||| |||||||| ||||| ||||| ||| Sbjct 14358970 ATTTGGTTCACTGCTTTAGGTATTAGGACTATGGCTTTCAATCTAAATGGGTTCAATTTC 14358911 Query 160661 AACCAGTCCATCTTGGACAACCAAGGACAAGTTCTGAACACTTGGGCAGACGTGCTTAAC 160720 ||||| || | | || | |||||| | ||| | | |||||||| || | | ||| Sbjct 14358910 AACCA-TCTGTAGTTGATAGCCAAGGTCGCGTTATTTATACTTGGGCTGATATCATCAAC 14358852 Query 160721 CGCGCTGGTCTGGGCATGGAAGTCATGCACGAGCGTAACGCTCACAAC 160768 || || ||| | |||||||| |||||||| ||||| |||||| || Sbjct 14358851 CGTGCAAATCTTGCTATGGAAGTAATGCACGAACGTAATGCTCACCAC 14358804 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 551375917293600