Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20barthii_20[genbank_20GCA_5F000182155.3_202014-05-08] 12 sequences; 308,272,304 total letters Query= NC_031906.1 Length=198190 Score E Sequences producing significant alignments: (Bits) Value seq10 531 6e-146 seq2 105 8e-18 seq8 82.4 1e-10 >seq10 Length=19274048 Score = 531 bits (588), Expect = 6e-146 Identities = 700/962 (73%), Gaps = 25/962 (3%) Strand=Plus/Plus Query 188878 AACCGTCTGTATGTCGGTTGGTTCGGTGTCCTGATGATCCCTACGCTTCTCG-CTGCAAC 188936 |||||||| || | || ||||| ||||| ||||||||||||| ||| | | | ||||| Sbjct 17610105 AACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTAC-CTTATTGACCGCAAC 17610163 Query 188937 CATCTGC-TTCATCGTCGCCTTTGTCGCTGCACCCCCTGTAGACATTGATGGCATCCGCG 188995 |||| || || ||||||| ||||||| || || ||||| |||||||| || || | Sbjct 17610164 T-TCTGTATTTATTATCGCCTTCATCGCTGCCCCTCCAGTAGATATTGATGGTATTCGTG 17610222 Query 188996 AACCCGTCGCTGGTTCACTCATGTATGGAAACAACATCATCTCTGGTGCTGTTGTCCCTT 189055 | || || ||||||| | | || |||||||| || ||||||||| | |||| ||| Sbjct 17610223 AGCCTGTTTCTGGTTCTTTACTTTACGGAAACAATATTATCTCTGGTACCATTGTTCCTA 17610282 Query 189056 CATCCAACGCAATTGGTCTTCACTTCTACCCCATCTGGGAAGCCGCCTCACTCGATGAGT 189115 | || || | || | ||||| ||||| || |||||||| || || | ||||||| Sbjct 17610283 CTTCTGCTGCGGTCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGT 17610342 Query 189116 GGCTCTACAACGGTGGTCCTTTCCAACTGGTAGTCTTCCACTTCCTCATCGGCATCTACG 189175 || | ||||| || ||||||| | || | || | |||||| | | || | || | Sbjct 17610343 GGTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGG--TGTA-G 17610399 Query 189176 CCT---ACATGGGTCGTGAGTGGGAACTCTCTTACCGTCTCGGTATGCGTCCTTGGATCT 189232 | | | |||||||||||||||||||| || |||||| ||||||||||||||||| | Sbjct 17610400 CTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTATGCGTCCTTGGAT-T 17610458 Query 189233 GC-ATTGCTTACTCTGCACCTGTTGCAGCAGCATCCGCAGTCTTTCTGGTCTATCCTTTT 189291 || |||| || || || ||||||||||| || | || || || || | || ||| || Sbjct 17610459 GCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTACCCTATT 17610518 Query 189292 GGTCAAGGTTCTTTCTCTGACGCAATGCCCTTGGGTATCAGTGGAACCTTCAACTACATG 189351 |||||||| ||||| ||| | ||||| || || || ||| || ||||||| ||| Sbjct 17610519 GGTCAAGGAAGTTTCTTTGATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTTATG 17610578 Query 189352 CTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCACATGCTGGGAGTCGCA 189411 |||| ||||| |||||||| |||||||| ||||| || || |||||| | || || || Sbjct 17610579 ATTGTATTCCAGGCAGAGCATAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCT 17610638 Query 189412 GGTGTCTTCGGTGGTTCACTGTTCTCCGCAATGCATGGTTCACTCGTTACCTCTTCACTG 189471 ||||| ||||| ||||| || ||| || |||||||||| | || |||||| || Sbjct 17610639 GGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTGCTTGGTAACCTCTAGTTTG 17610698 Query 189472 GTTCGTGAAACCACTGAAACCGAGTCCCAGAACTATGGTTACAAGTTTGGACAAGAAGAA 189531 | | ||||||||||||| ||| || || | ||||||| ||||| ||||| ||| Sbjct 17610699 ATCAGGGAAACCACTGAAAACGAATCTGCTAATGAGGGTTACAGATTTGGTCAAGAGGAA 17610758 Query 189532 GAAACGTACAACATCGTTGCTGCTCATGGATATTTCGGTCGTCTTATCTTCCAATATGCA 189591 || || || || || || || |||||||| || |||||||||||||| Sbjct 17610759 GAGACTTATAATATTGTGGCCGCTCATGGTTA-------------ATCTTCCAATATGCT 17610805 Query 189592 TCGTTCAACAACTCCCGTTCACTTCACTTCTTCCTCGCTGCCTGGCCAGTCGTGGGTATC 189651 || |||||||| ||||| | ||||||||| | | ||| ||||| || || || || Sbjct 17610806 AGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGATGCTTGGCCTGTAGTAGGGATT 17610865 Query 189652 TGGTTTACCGCCCTCGGCGTCAGCACCATGGCATTCAACCTCAATGGGTTCAACTTCAAT 189711 ||||| || || | || | || || ||||| ||||| || || || ||||| ||||| Sbjct 17610866 TGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAATCTAAACGGATTCAATTTCAAC 17610925 Query 189712 CAATCCATTCTTGATGGTCAAGGTCGTGTTCTGAACACATGGGCAGACGTTCTCAACCGT 189771 ||||| | ||||| | |||||||| ||| | || || ||||| || | |||||||| Sbjct 17610926 CAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGATATCATCAACCGT 17610985 Query 189772 GCTGGTCTTGGTATGGAAGTCATGCATGAGCGTAACGCTCACAACTTCCCTCTTGATCTG 189831 ||| ||||||||||||||| ||||| || ||| | ||||||||||||||||| || || Sbjct 17610986 GCTAATCTTGGTATGGAAGTAATGCACGAACGTTATGCTCACAACTTCCCTCTAGACCTA 17611045 Query 189832 GC 189833 || Sbjct 17611046 GC 17611047 >seq2 Length=31686972 Score = 105 bits (116), Expect = 8e-18 Identities = 125/168 (74%), Gaps = 1/168 (1%) Strand=Plus/Minus Query 189649 ATCTGGTTTACCGCCCTCGGCGTCAGCACCATGGCATTCAACCTCAATGGGTTCAACTTC 189708 || ||||| || || | || | || || ||||| ||||| || ||||||||||| ||| Sbjct 14358970 ATTTGGTTCACTGCTTTAGGTATTAGGACTATGGCTTTCAATCTAAATGGGTTCAATTTC 14358911 Query 189709 AATCAATCCATTCTTGATGGTCAAGGTCGTGTTCTGAACACATGGGCAGACGTTCTCAAC 189768 || | ||| | ||||| | |||||||| ||| | | || ||||| || | ||||| Sbjct 14358910 AA-CCATCTGTAGTTGATAGCCAAGGTCGCGTTATTTATACTTGGGCTGATATCATCAAC 14358852 Query 189769 CGTGCTGGTCTTGGTATGGAAGTCATGCATGAGCGTAACGCTCACAAC 189816 ||||| ||||| ||||||||| ||||| || ||||| |||||| || Sbjct 14358851 CGTGCAAATCTTGCTATGGAAGTAATGCACGAACGTAATGCTCACCAC 14358804 >seq8 Length=22678724 Score = 82.4 bits (90), Expect = 1e-10 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 189764 TCAACCGTGCTGGTCTTGGTATGGAAGTCATGCATGAGCGTAACGCTCACAACTTCCCTC 189823 |||||| |||| ||||||||||||||| ||||| || ||||| |||||||||||||||| Sbjct 21568427 TCAACCATGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTC 21568368 Query 189824 TTGATCTGGCAGC 189836 | || || || || Sbjct 21568367 TAGACCTAGCTGC 21568355 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 634079904888000