Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20barthii_20[genbank_20GCA_5F000182155.3_202014-05-08] 12 sequences; 308,272,304 total letters Query= NC_031922.1 Length=174830 Score E Sequences producing significant alignments: (Bits) Value seq10 628 3e-175 seq8 98.7 1e-15 seq2 93.3 5e-14 >seq10 Length=19274048 Score = 628 bits (696), Expect = 3e-175 Identities = 718/962 (75%), Gaps = 17/962 (2%) Strand=Plus/Plus Query 160599 AATCGTCTTTACGTCGGTTGGTTCGGTGTGCTGATGATCCCAACTCTGTTGGCAGCAACC 160658 || ||||||||| | || ||||| ||||| |||||||||| || | ||| | ||||| Sbjct 17610105 AACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACT 17610164 Query 160659 GTCTGC-TTTATTACTGCGTTCGTTGCTGCTCCCCCCGTGGACATCGACGGTATCCGTGA 160717 |||| ||||||| || ||| | ||||| || || || || || || ||||| ||||| Sbjct 17610165 -TCTGTATTTATTATCGCCTTCATCGCTGCCCCTCCAGTAGATATTGATGGTATTCGTGA 17610223 Query 160718 ACCCGTTGCTGGTTCACTGATGTATGGAAACAACATCATCTCTGGTGCAGTTGTTCCTTC 160777 || ||| ||||||| | | || |||||||| || ||||||||| | |||||||| | Sbjct 17610224 GCCTGTTTCTGGTTCTTTACTTTACGGAAACAATATTATCTCTGGTACCATTGTTCCTAC 17610283 Query 160778 TTCCAACGCAATTGGTCTTCACTTCTACCCCATTTGGGAAGCTGCATCTCTTGATGAATG 160837 ||| || | || | ||||| ||||| |||||||||||||||||| ||||||| || Sbjct 17610284 TTCTGCTGCGGTCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTG 17610343 Query 160838 GCTCTACAATGGTGGTCCTTACCAACTGGTCGTATTTCACTTCCTGATCGGCATCTTCTG 160897 | | |||||||| |||||||| | || | || | |||||| | | || | || Sbjct 17610344 GTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTG 17610403 Query 160898 CTACATGGGTCGCGAGTGGGAACTTTCCTACCGCCTCGGCATGCGCCCCTGGATCTGC-G 160956 || |||||||| ||||||||||| | ||| || || ||||| || ||||| ||| | Sbjct 17610404 TTATATGGGTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTATGCGTCCTTGGAT-TGCTG 17610462 Query 160957 TTGCATATTCTGCACCTGTTGCTGCTGCGAGTGCAGTATTCCTCGTCTATCCTTTCGGTC 161016 |||||||||| || |||||||| ||||| | ||| || ||| | | || ||| | |||| Sbjct 17610463 TTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTACCCTATTGGTC 17610522 Query 161017 AAGGTTCTTTCTCTGATGGTATGCCCCTGGGTATCTCTGGTACCTTCAACTTCATGCTTG 161076 |||| ||||| |||||||||||| | || || |||||||| |||||||| ||| ||| Sbjct 17610523 AAGGAAGTTTCTTTGATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTTATGATTG 17610582 Query 161077 TCTTCCAGGCAGAACACAACATCCTGATGCACCCCTTCCACATGTTGGGTGTTGCTGGTG 161136 | ||||||||||| || |||||||| ||||| || || |||||||| ||||| ||||||| Sbjct 17610583 TATTCCAGGCAGAGCATAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTG 17610642 Query 161137 TCTTCGGTGGTTCTCTGTTCTCCGCAATGCATGGTTCACTGGTTACTTCTTCCCTGGTTC 161196 | ||||| ||||| || ||| || |||||||||| |||| || ||| || | Sbjct 17610643 TATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTGCTTGGTAACCTCTAGTTTGATCA 17610702 Query 161197 GTGAAACCACTGAGAACGAGTCCCAGAACTATGGTTACAAGTTTGGTCAAGAAGAAGAGA 161256 | ||||||||||| ||||| || || | ||||||| ||||||||||| ||||||| Sbjct 17610703 GGGAAACCACTGAAAACGAATCTGCTAATGAGGGTTACAGATTTGGTCAAGAGGAAGAGA 17610762 Query 161257 CCTACAACATCGTCGCTGCTCATGGTTACTTCGGTCGCCTGATCTTCCAATACGCTTCCT 161316 | || || || || || ||||||||||| ||||||||||| ||| | Sbjct 17610763 CTTATAATATTGTGGCCGCTCATGGTTA-------------ATCTTCCAATATGCTAGTT 17610809 Query 161317 TCAACAACTCCCGTTCGTTGCACTTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGGT 161376 | |||||||| ||||| || ||||||||| | | || |||||||| || || || |||| Sbjct 17610810 TTAACAACTCTCGTTCTTTACACTTCTTCTTGGATGCTTGGCCTGTAGTAGGGATTTGGT 17610869 Query 161377 TCACTGCACTTGGTGTCTCCACCATGGCATTCAACCTGAACGGATTCAACTTCAACCAGT 161436 ||||||| | ||| | || ||||| ||||| || ||||||||||| |||||||| | Sbjct 17610870 TCACTGCTTTAGGTATTAGTACTATGGCTTTCAATCTAAACGGATTCAATTTCAACCAAT 17610929 Query 161437 CCATCATGGATGGTCAGGGCAAAGTCCTGAACACCTGGGCTGACGTTCTGAATCGTGCTA 161496 | | | ||| | || || || | || || |||||||| | | || ||||||| Sbjct 17610930 CTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGATATCATCAACCGTGCTA 17610989 Query 161497 ACCTTGGTATGGAAGTAATGCACGAGCGTAATGCTCACAACTTCCCTCTGGATCTCGCTG 161556 | ||||||||||||||||||||||| ||| ||||||||||||||||||| || || ||| Sbjct 17610990 ATCTTGGTATGGAAGTAATGCACGAACGTTATGCTCACAACTTCCCTCTAGACCTAGCTA 17611049 Query 161557 CT 161558 || Sbjct 17611050 CT 17611051 >seq8 Length=22678724 Score = 98.7 bits (108), Expect = 1e-15 Identities = 62/67 (93%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 161492 TGCTAACCTTGGTATGGAAGTAATGCACGAGCGTAATGCTCACAACTTCCCTCTGGATCT 161551 |||||| ||||||||||||||||||||||| ||||||||||||||||||||||| || || Sbjct 21568420 TGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTAGACCT 21568361 Query 161552 CGCTGCT 161558 |||||| Sbjct 21568360 AGCTGCT 21568354 >seq2 Length=31686972 Score = 93.3 bits (102), Expect = 5e-14 Identities = 122/168 (73%), Gaps = 1/168 (1%) Strand=Plus/Minus Query 161370 ATCTGGTTCACTGCACTTGGTGTCTCCACCATGGCATTCAACCTGAACGGATTCAACTTC 161429 || ||||||||||| | ||| | || ||||| ||||| || || || ||||| ||| Sbjct 14358970 ATTTGGTTCACTGCTTTAGGTATTAGGACTATGGCTTTCAATCTAAATGGGTTCAATTTC 14358911 Query 161430 AACCAGTCCATCATGGATGGTCAGGGCAAAGTCCTGAACACCTGGGCTGACGTTCTGAAT 161489 ||||| || | | ||| | || || || | | || |||||||| | | || Sbjct 14358910 AACCA-TCTGTAGTTGATAGCCAAGGTCGCGTTATTTATACTTGGGCTGATATCATCAAC 14358852 Query 161490 CGTGCTAACCTTGGTATGGAAGTAATGCACGAGCGTAATGCTCACAAC 161537 ||||| || |||| |||||||||||||||||| |||||||||||| || Sbjct 14358851 CGTGCAAATCTTGCTATGGAAGTAATGCACGAACGTAATGCTCACCAC 14358804 Score = 93.3 bits (102), Expect = 5e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 164370 GCGGCGATCTTCAGATTCCTCTTGTTCCTCCAAGGTTTCCATAACTGGACACTCAACCCC 164429 || ||||| || ||||| || | ||| ||||||| || ||||| ||||| | ||||| Sbjct 31659706 GCAGCGATATTTCGATTCATCCTCTTCTTCCAAGGATTTCATAATTGGACGTTGAACCCA 31659765 Query 164430 TTCCATATGATGGGTGTTGCAGGCATCCTTGGTGGTGCTCTTCTCTGTGCTATTCATGGT 164489 || ||||||||||| ||||| || | | || | ||||| || || ||||||||||| Sbjct 31659766 TTTCATATGATGGGAGTTGCTGGAGTATTAGGCGCGGCTCTGCTATGCGCTATTCATGGG 31659825 Query 164490 GCTACCGTAGAGAA 164503 || ||||| || || Sbjct 31659826 GCAACCGTGGAAAA 31659839 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 559327916100800