Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20brachyantha_20[refseq_20GCF_5F000231095.1_202012-01-19] 2,491 sequences; 259,907,595 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq182 168 1e-39 >seq182 Length=15015 Score = 168 bits (186), Expect = 1e-39 Identities = 198/258 (77%), Gaps = 11/258 (4%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| |||| ||| ||| |||||| ||| ||||| |||||| | Sbjct 7759 GTACAAAGGGCAGGGACGTAATCAAGGCGTGCT-GATGACACGCCTTTACTGGGAATT-C 7816 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| | | |||||| ||| | ||||| | | || | ||||| | || Sbjct 7817 CTCGTTCATGTGGTACAATTTCAAGCCACAATCCCTAGTAAGAAGGCGTTTCAGCGGGTT 7876 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||| ||||| ||||||| || | ||| || ||| | || ||||||||||||||| Sbjct 7877 ACCCAGACCTTTCGGCCAGGGAG---GACACGCTGACACCTCCATTGTAGCGCGCGTGCG 7933 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTG-GCCTAAA 238 ||||||||||||||||||||||||||||||||||||| ||||| || |||| | |||| Sbjct 7934 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCT--CGTGCGGCTAAG 7990 Query 239 AGGC-CATCTCCCTCGAA 255 || | | | |||||| || Sbjct 7991 AGCCGCCTGTCCCTCTAA 8008 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751981853065