Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20brachyantha_20[refseq_20GCF_5F000231095.1_202012-01-19] 2,491 sequences; 259,907,595 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq182 187 5e-45 >seq182 Length=15015 Score = 187 bits (206), Expect = 5e-45 Identities = 216/286 (76%), Gaps = 9/286 (3%) Strand=Plus/Minus Query 40 TGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTC 99 ||| |||||||| |||| || | ||| | || ||||||||||| ||||||||||| || Sbjct 8695 TGCTCTTCACTGAGTGTCGAGGTGGGCCGGCACGTTTACTTTGAACAAATTAGAGTGCTC 8636 Query 100 AAAGCAGGCCTT----TG--CTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCG 153 |||||||| | || || ||||| || |||||||||||| ||||||||| | || Sbjct 8635 AAAGCAGGTCAAGTGATGGCCTTGAATATTTTTGCATGGAATAATGGAATAGGACTT-CG 8577 Query 154 GTTCTATTTTGTTGGTTTCTAGGACC-GCCGTAATGATTAATAGGGATAGTCGGGGGTGT 212 || | ||||||||||||| |||||| | |||||||| ||| | || || |||||| | Sbjct 8576 GTCCCATTTTGTTGGTTTTAAGGACCTGAAGTAATGATAAATGGAGACAGGCGGGGGCAT 8517 Query 213 CAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAG 272 ||||| || ||||||||||||||||||| ||||| ||| ||||||| Sbjct 8516 TCGTATTGCTACGTTAGAGGTGAAATTCTTGGATCGTAGCAAGACGGACTGAAGCGAAAG 8457 Query 273 CGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 | || ||||||||||| || || |||| ||||||||||| |||| Sbjct 8456 CATTTGCCAAGGATGTTCTCGTTGATCA-AGAACGAAAGTTTGGGG 8412 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915177202368