Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20brachyantha_20[refseq_20GCF_5F000231095.1_202012-01-19] 2,491 sequences; 259,907,595 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq234 172 2e-40 seq182 149 3e-33 >seq234 Length=7173 Score = 172 bits (190), Expect = 2e-40 Identities = 134/160 (84%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 522 CCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGAT 581 |||| || ||| | | || || || |||| ||||| | |||| |||||||||||||| Sbjct 6198 CCGACCCCGATCTTCTGTGAAGGGTTCGAGTTGGAGCACACCTGTCGGGACCCGAAAGAT 6257 Query 582 GGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGT 641 |||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| | Sbjct 6258 GGTGAACTATGCCTGAGCAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGAAGCGAT 6317 Query 642 TCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGC 681 ||| ||||||||||| | ||| | |||||||||||||| Sbjct 6318 ACTGACGTGCAAATCGTTTGTCTGACTTGGGTATAGGGGC 6357 >seq182 Length=15015 Score = 149 bits (164), Expect = 3e-33 Identities = 111/130 (85%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 554 AGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGA 613 ||||| || |||||| |||||||||||||||| ||||||||| ||||||||||||| Sbjct 5078 AGAGCGTACATGTTGGTACCCGAAAGATGGTGACCTATGCCTGGCCAGGGTGAAGCCAGG 5019 Query 614 GGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGT 673 |||||| ||||||||||| || ||| ||||| ||||||||||||| |||| | ||||| Sbjct 5018 GGAAACCCTGGTGGAGGCCCGAAGCAATTCTGACGTGCAAATCGATTGTCAGAGCTGGGT 4959 Query 674 ATAGGGGCGA 683 |||||||||| Sbjct 4958 ATAGGGGCGA 4949 Score = 105 bits (116), Expect = 3e-20 Identities = 113/147 (77%), Gaps = 2/147 (1%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| || ||| | ||||| ||| |||| |||| ||| | ||||| ||||||| Sbjct 5741 GAGTCGGTCTGCTTGAAAGTGCAGACTTAAGTGGGTGGTAGATTCCATCTAAGGCTAAAT 5682 Query 100 ATTGGCCAGA-GACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGA 158 | ||| | ||||||||||||||||||| ||| ||||| ||||||| |||||| | Sbjct 5681 ACAA-CCACATGACCGATAGCGCACAAGTACCATGAGGGAAAGGTGAAAAGAACTTTGAA 5623 Query 159 AAGAGAGTTAAAAAGCACGTGAAATTG 185 ||||||||| || || |||||||| || Sbjct 5622 AAGAGAGTTCAAGAGTACGTGAAACTG 5596 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079946568050