Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Oryza_20brachyantha_20[refseq_20GCF_5F000231095.1_202012-01-19]
2,491 sequences; 259,907,595 total letters
Query= AAMG01000304.1
Length=683
Score E
Sequences producing significant alignments: (Bits) Value
seq234 172 2e-40
seq182 149 3e-33
>seq234
Length=7173
Score = 172 bits (190), Expect = 2e-40
Identities = 134/160 (84%), Gaps = 0/160 (0%)
Strand=Plus/Plus
Query 522 CCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGAT 581
|||| || ||| | | || || || |||| ||||| | |||| ||||||||||||||
Sbjct 6198 CCGACCCCGATCTTCTGTGAAGGGTTCGAGTTGGAGCACACCTGTCGGGACCCGAAAGAT 6257
Query 582 GGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGT 641
|||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |
Sbjct 6258 GGTGAACTATGCCTGAGCAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGAAGCGAT 6317
Query 642 TCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGC 681
||| ||||||||||| | ||| | ||||||||||||||
Sbjct 6318 ACTGACGTGCAAATCGTTTGTCTGACTTGGGTATAGGGGC 6357
>seq182
Length=15015
Score = 149 bits (164), Expect = 3e-33
Identities = 111/130 (85%), Gaps = 0/130 (0%)
Strand=Plus/Minus
Query 554 AGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGA 613
||||| || |||||| |||||||||||||||| ||||||||| |||||||||||||
Sbjct 5078 AGAGCGTACATGTTGGTACCCGAAAGATGGTGACCTATGCCTGGCCAGGGTGAAGCCAGG 5019
Query 614 GGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGT 673
|||||| ||||||||||| || ||| ||||| ||||||||||||| |||| | |||||
Sbjct 5018 GGAAACCCTGGTGGAGGCCCGAAGCAATTCTGACGTGCAAATCGATTGTCAGAGCTGGGT 4959
Query 674 ATAGGGGCGA 683
||||||||||
Sbjct 4958 ATAGGGGCGA 4949
Score = 105 bits (116), Expect = 3e-20
Identities = 113/147 (77%), Gaps = 2/147 (1%)
Strand=Plus/Minus
Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99
|||||| || ||| | ||||| ||| |||| |||| ||| | ||||| |||||||
Sbjct 5741 GAGTCGGTCTGCTTGAAAGTGCAGACTTAAGTGGGTGGTAGATTCCATCTAAGGCTAAAT 5682
Query 100 ATTGGCCAGA-GACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGA 158
| ||| | ||||||||||||||||||| ||| ||||| ||||||| |||||| |
Sbjct 5681 ACAA-CCACATGACCGATAGCGCACAAGTACCATGAGGGAAAGGTGAAAAGAACTTTGAA 5623
Query 159 AAGAGAGTTAAAAAGCACGTGAAATTG 185
||||||||| || || |||||||| ||
Sbjct 5622 AAGAGAGTTCAAGAGTACGTGAAACTG 5596
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 2079946568050
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |