Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20brachyantha_20[refseq_20GCF_5F000231095.1_202012-01-19] 2,491 sequences; 259,907,595 total letters Query= AAMG01000567.1 Length=197 Score E Sequences producing significant alignments: (Bits) Value seq3 87.8 2e-15 seq82 73.4 4e-11 >seq3 Length=29620734 Score = 87.8 bits (96), Expect = 2e-15 Identities = 86/110 (78%), Gaps = 1/110 (1%) Strand=Plus/Plus Query 80 TAAGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGG 139 ||||||||| |||||| | ||| |||||||||||| || |||| || | | ||| || Sbjct 16594710 TAAGGAACTCGGCAAAATAGCCCCGTAACTTCGGGAGAAGGGGTGCCCCCTCGCAAAAGG 16594769 Query 140 GAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCT 189 | || ||||| || ||| || ||| |||||||| |||||||||||| || Sbjct 16594770 G-GGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCT 16594818 >seq82 Length=35524 Score = 73.4 bits (80), Expect = 4e-11 Identities = 77/100 (77%), Gaps = 1/100 (1%) Strand=Plus/Plus Query 90 GGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGGGAGGGCGCAG 149 |||||| | ||| |||||||||||| || |||| || | ||| ||| || ||||| Sbjct 5184 GGCAAAATAGCCCCGTAACTTCGGGAGAAGGGGTGCCCCCTTGCAAAAGGG-GGTCGCAG 5242 Query 150 AGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCT 189 || ||| || |||||||||||| |||||||||||| || Sbjct 5243 TGACCAGGCCCGGGCAACTGTTTACCAAAAACACAGGTCT 5282 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531187181314