Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20brachyantha_20[refseq_20GCF_5F000231095.1_202012-01-19] 2,491 sequences; 259,907,595 total letters Query= AAMG01000636.1 Length=426 Score E Sequences producing significant alignments: (Bits) Value seq3 277 5e-72 seq1 116 9e-24 seq6 111 4e-22 seq5 78.8 2e-12 seq2 73.4 1e-10 >seq3 Length=29620734 Score = 277 bits (306), Expect = 5e-72 Identities = 310/418 (74%), Gaps = 26/418 (6%) Strand=Plus/Minus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 |||||||||||| || || ||||||| ||||||| ||||||| ||| |||||| Sbjct 16595062 GCATCTTCACAGACATGTCTATTTCACCGAGTCTCTCTCCGAGACAGTGCCCAGATCGTT 16595003 Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132 ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 16595002 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 16594943 Query 133 TTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTC----GCGTTAGCTAACCC 188 | ||||||||||||||| |||||||||||| || ||||| | | || | ||| Sbjct 16594942 TAGTTACGGCCGCCGTTCACCGGGGCTTCGGTCGCCGGCTTCCCTGTCATCAGTTCACCA 16594883 Query 189 CATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTT 248 | || |||||||||||| |||||||||||| ||| |||| | ||| || ||| Sbjct 16594882 ACTTCCTTGACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTTT 16594823 Query 249 GCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATGAG 308 || ||| |||||||||| ||||||||||| |||||||| || ||||| | | | Sbjct 16594822 GCGGAGACCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACCCCCTTTTG 16594763 Query 309 CTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCTTT 368 | ||| ||| | ||||||||||||||||||| || || Sbjct 16594762 C-----GAG-----------------GGGGCACCCCTTCTCCCGAAGTTACGGGGCTATT 16594725 Query 369 TTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACCCAACCAC 426 ||||| |||||||| ||||| |||| || ||| ||||||||||||| | |||| Sbjct 16594724 TTGCCGAGTTCCTTAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTACCTACCCAC 16594667 Score = 80.6 bits (88), Expect = 7e-13 Identities = 73/92 (79%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 |||||||||||| || || ||||||| ||||||| |||| || ||| |||||| Sbjct 16598014 GCATCTTCACAGACATGTCTATTTCACCGAGTCTCTCTCCGAGAAAGTGCCCAGATCGTT 16598073 Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGAC 104 || || ||||||| ||||||||||||| |||| Sbjct 16598074 ACACCTTTCGTGCGGGTCGGAACTTACTCGAC 16598105 >seq1 Length=33916305 Score = 116 bits (128), Expect = 9e-24 Identities = 113/145 (78%), Gaps = 4/145 (3%) Strand=Plus/Plus Query 92 GAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATTGTTACGGCCGCCGTTTA 151 |||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| | Sbjct 30228420 GAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGATCGCCGTTCA 30228479 Query 152 CCGGGGCTTCGATCAAGAGCT----TCGCGTTAGCTAACCCCATCAATTAACCTTCCGGC 207 ||||||||||| || ||| | | | || | ||| | || ||||| |||| Sbjct 30228480 CCGGGGCTTCGGTCGCCGGCTTTCCTGTCATCAGTTCACCAACTTCCTTGACCTTTCGGC 30228539 Query 208 ACCGGGCAGGCGTCACACCCTATAC 232 || ||||||| |||| ||| |||| Sbjct 30228540 ACTGGGCAGGTGTCAGCCCCCATAC 30228564 >seq6 Length=21794218 Score = 111 bits (122), Expect = 4e-22 Identities = 139/187 (74%), Gaps = 8/187 (4%) Strand=Plus/Minus Query 86 AGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATTGTTACGGCCGC 145 ||||| ||||| | ||||||||||||||||||||||||| |||| ||||| | | | Sbjct 960 AGGTCACTACTTATGCAACAAGGAATTTCGCTACCTTAGGACAGTTA--GTTACTGTCAC 903 Query 146 CGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTAGCTAACCCCATCAATTAACCTTCCG 205 |||||||||||||||| || | ||||| | || | || || | |||||||| Sbjct 902 CGTTTACCGGGGCTTCCATTCAAAGCTTACCACA--CTT-CTCCTTC---TGACCTTCCG 849 Query 206 GCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGCAGAGTGCTGTGTTTT 265 ||||||||||| ||| || |||| | || || | || ||||||| |||||||| Sbjct 848 GCACCGGGCAGTTGTCCGACTCTATTCATCGTGTTACCACTTAGCAGAGTCATGTGTTTT 789 Query 266 TAATAAA 272 ||||||| Sbjct 788 TAATAAA 782 >seq5 Length=20131956 Score = 78.8 bits (86), Expect = 2e-12 Identities = 72/91 (79%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 7 TACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCC 66 ||| | |||||||||| | || ||||||||||| | ||| | |||||||||| || Sbjct 16502 TACTCCGCATCTTCACGGAGAATTCAATTTCACCGGGTCCATGTCGGAGACAGCGGGGCA 16561 Query 67 ATCGTTACGCCATTCGTGCAGGTCGGAACTT 97 ||||||| |||||||||||||||| |||| Sbjct 16562 GTCGTTACACCATTCGTGCAGGTCGCTACTT 16592 >seq2 Length=27082872 Score = 73.4 bits (80), Expect = 1e-10 Identities = 65/80 (81%), Gaps = 1/80 (1%) Strand=Plus/Plus Query 96 TTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATTGTTACGGCCGCCGTTT-ACCG 154 |||||||||||| ||||| ||||||||| || ||||| ||| |||||| |||| |||| Sbjct 22687750 TTACCCGACAAGAAATTTTGCTACCTTACAACTGTTATAGTTGTGGCCGCTGTTTCACCG 22687809 Query 155 GGGCTTCGATCAAGAGCTTC 174 || ||||| || |||||| Sbjct 22687810 GGACTTCGGTCGTCAGCTTC 22687829 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1260768593472