Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Oryza_20brachyantha_20[refseq_20GCF_5F000231095.1_202012-01-19]
2,491 sequences; 259,907,595 total letters
Query= AAMG01000753.1
Length=364
Score E
Sequences producing significant alignments: (Bits) Value
seq3 342 1e-91
seq82 134 3e-29
seq1 123 5e-26
seq6 107 4e-21
>seq3
Length=29620734
Score = 342 bits (378), Expect = 1e-91
Identities = 289/353 (82%), Gaps = 7/353 (2%)
Strand=Plus/Minus
Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66
|||||||||| | || | |||||||||||||| | ||||||||||||| ||||||
Sbjct 16595062 GCATCTTCACAGACATGTCTATTTCACCGAGTCTCTCTCCGAGACAGTGCCCAGATCGTT 16595003
Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 16595002 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 16594943
Query 127 TAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGAT-TGCTC---TAACAG 182
||||||||||||||||| || ||||||| || | ||||| | | || | ||
Sbjct 16594942 TAGTTACGGCCGCCGTTCACCGGGGCTTCGGTCGCCGGCTTCCCTGTCATCAGTTCACCA 16594883
Query 183 ATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTA 242
| |||| ||||||| |||| |||||||||||||| || |||||| ||||| ||||||
Sbjct 16594882 ACTTCCTTGACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTTT 16594823
Query 243 GCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCTGTCATAG 302
|| || ||||||||||||||||||||||||| |||||| || ||||| || | |
Sbjct 16594822 GCGGAGACCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACCCCCTTTTG 16594763
Query 303 ACA---GGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTA 352
| ||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 16594762 CGAGGGGGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCTTA 16594710
Score = 98.7 bits (108), Expect = 2e-18
Identities = 77/92 (84%), Gaps = 0/92 (0%)
Strand=Plus/Plus
Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66
|||||||||| | || | |||||||||||||| | |||| |||||||| ||||||
Sbjct 16598014 GCATCTTCACAGACATGTCTATTTCACCGAGTCTCTCTCCGAGAAAGTGCCCAGATCGTT 16598073
Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGAC 98
|| |||||||||||||||||||||||| ||||
Sbjct 16598074 ACACCTTTCGTGCGGGTCGGAACTTACTCGAC 16598105
>seq82
Length=35524
Score = 134 bits (148), Expect = 3e-29
Identities = 128/163 (79%), Gaps = 3/163 (2%)
Strand=Plus/Minus
Query 187 CCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAG 246
|||| | ||||| |||| |||||||||||||| || |||||| ||||| |||||| |
Sbjct 5342 CCTTGATCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTTTATGG 5283
Query 247 AAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCG---GCCTGTCATAGA 303
| |||||||||||||||||||||| || |||||| || ||||| ||| | |
Sbjct 5282 AGACCTGTGTTTTTGGTAAACAGTTGCCCGGGCCTGGTCACTGCGACCCCCTTTTGCAAG 5223
Query 304 CAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGT 346
||||||||||||||| ||||||||||| ||||||||| ||
Sbjct 5222 GGGGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGGGT 5180
>seq1
Length=33916305
Score = 123 bits (136), Expect = 5e-26
Identities = 122/157 (78%), Gaps = 12/157 (8%)
Strand=Plus/Plus
Query 86 GAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTA 145
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct 30228420 GAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGATCGCCGTTCA 30228479
Query 146 CTGGGGCTTAAGTTCACTGCTTCGATTGCTCT-AACAGATC-------CCCTTAACCTTC 197
| ||||||| || | ||| || || | | ||| || |||| |||||
Sbjct 30228480 CCGGGGCTTCGGTCGCCGGCT----TTCCTGTCATCAGTTCACCAACTTCCTTGACCTTT 30228535
Query 198 CAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTT 234
| |||| ||||||| |||||| || |||||| |||||
Sbjct 30228536 CGGCACTGGGCAGGTGTCAGCCCCCATACATGGTCTT 30228572
Score = 91.5 bits (100), Expect = 3e-16
Identities = 76/91 (84%), Gaps = 3/91 (3%)
Strand=Plus/Minus
Query 187 CCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAG 246
|||| |||||||||||| |||||||||||||| || ||| || ||||| | || | |
Sbjct 9797887 CCTTGACCTTCCAGCACTGGGCAGGCGTCAGCCCCCATATATGGTCTTAC--TTTTGTGG 9797830
Query 247 AAACCTGTGTTTTTGGTAAACAGTCGCTTGG 277
| |||||||||||| ||||||||||||||||
Sbjct 9797829 AGACCTGTGTTTTT-GTAAACAGTCGCTTGG 9797800
>seq6
Length=21794218
Score = 107 bits (118), Expect = 4e-21
Identities = 133/181 (73%), Gaps = 12/181 (7%)
Strand=Plus/Minus
Query 88 ACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACT 147
||||| | ||||||||||||||||||||||||| |||| ||||| | | ||||||||
Sbjct 952 ACTTATGCAACAAGGAATTTCGCTACCTTAGGACAGTTA--GTTACTGTCACCGTTTACC 895
Query 148 GGGGCTTAAGTTCACTGCTTCGATTGCTCTAACAGATCCCCTTA--ACCTTCCAGCACCG 205
||||||| |||| |||| ||| || |||| ||||||| ||||||
Sbjct 894 GGGGCTTCCATTCAAAGCTTACC--------ACACTTCTCCTTCTGACCTTCCGGCACCG 843
Query 206 GGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAGAAACCTGTGTTTTTGGTAA 265
||||| ||| | |||| |||||| || | |||||||||| | ||||||||| |||
Sbjct 842 GGCAGTTGTCCGACTCTATTCATCGTGTTACCACTTAGCAGAGTCATGTGTTTTTAATAA 783
Query 266 A 266
|
Sbjct 782 A 782
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1062373535616
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |