Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20brachyantha_20[refseq_20GCF_5F000231095.1_202012-01-19] 2,491 sequences; 259,907,595 total letters Query= AAMG01000753.1 Length=364 Score E Sequences producing significant alignments: (Bits) Value seq3 342 1e-91 seq82 134 3e-29 seq1 123 5e-26 seq6 107 4e-21 >seq3 Length=29620734 Score = 342 bits (378), Expect = 1e-91 Identities = 289/353 (82%), Gaps = 7/353 (2%) Strand=Plus/Minus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 |||||||||| | || | |||||||||||||| | ||||||||||||| |||||| Sbjct 16595062 GCATCTTCACAGACATGTCTATTTCACCGAGTCTCTCTCCGAGACAGTGCCCAGATCGTT 16595003 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 16595002 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 16594943 Query 127 TAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGAT-TGCTC---TAACAG 182 ||||||||||||||||| || ||||||| || | ||||| | | || | || Sbjct 16594942 TAGTTACGGCCGCCGTTCACCGGGGCTTCGGTCGCCGGCTTCCCTGTCATCAGTTCACCA 16594883 Query 183 ATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTA 242 | |||| ||||||| |||| |||||||||||||| || |||||| ||||| |||||| Sbjct 16594882 ACTTCCTTGACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTTT 16594823 Query 243 GCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCTGTCATAG 302 || || ||||||||||||||||||||||||| |||||| || ||||| || | | Sbjct 16594822 GCGGAGACCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACCCCCTTTTG 16594763 Query 303 ACA---GGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTA 352 | ||||||||||||||| ||||||||||| |||||||||||||||||| Sbjct 16594762 CGAGGGGGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCTTA 16594710 Score = 98.7 bits (108), Expect = 2e-18 Identities = 77/92 (84%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 |||||||||| | || | |||||||||||||| | |||| |||||||| |||||| Sbjct 16598014 GCATCTTCACAGACATGTCTATTTCACCGAGTCTCTCTCCGAGAAAGTGCCCAGATCGTT 16598073 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGAC 98 || |||||||||||||||||||||||| |||| Sbjct 16598074 ACACCTTTCGTGCGGGTCGGAACTTACTCGAC 16598105 >seq82 Length=35524 Score = 134 bits (148), Expect = 3e-29 Identities = 128/163 (79%), Gaps = 3/163 (2%) Strand=Plus/Minus Query 187 CCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAG 246 |||| | ||||| |||| |||||||||||||| || |||||| ||||| |||||| | Sbjct 5342 CCTTGATCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTTTATGG 5283 Query 247 AAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCG---GCCTGTCATAGA 303 | |||||||||||||||||||||| || |||||| || ||||| ||| | | Sbjct 5282 AGACCTGTGTTTTTGGTAAACAGTTGCCCGGGCCTGGTCACTGCGACCCCCTTTTGCAAG 5223 Query 304 CAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGT 346 ||||||||||||||| ||||||||||| ||||||||| || Sbjct 5222 GGGGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGGGT 5180 >seq1 Length=33916305 Score = 123 bits (136), Expect = 5e-26 Identities = 122/157 (78%), Gaps = 12/157 (8%) Strand=Plus/Plus Query 86 GAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTA 145 ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | Sbjct 30228420 GAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGATCGCCGTTCA 30228479 Query 146 CTGGGGCTTAAGTTCACTGCTTCGATTGCTCT-AACAGATC-------CCCTTAACCTTC 197 | ||||||| || | ||| || || | | ||| || |||| ||||| Sbjct 30228480 CCGGGGCTTCGGTCGCCGGCT----TTCCTGTCATCAGTTCACCAACTTCCTTGACCTTT 30228535 Query 198 CAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTT 234 | |||| ||||||| |||||| || |||||| ||||| Sbjct 30228536 CGGCACTGGGCAGGTGTCAGCCCCCATACATGGTCTT 30228572 Score = 91.5 bits (100), Expect = 3e-16 Identities = 76/91 (84%), Gaps = 3/91 (3%) Strand=Plus/Minus Query 187 CCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAG 246 |||| |||||||||||| |||||||||||||| || ||| || ||||| | || | | Sbjct 9797887 CCTTGACCTTCCAGCACTGGGCAGGCGTCAGCCCCCATATATGGTCTTAC--TTTTGTGG 9797830 Query 247 AAACCTGTGTTTTTGGTAAACAGTCGCTTGG 277 | |||||||||||| |||||||||||||||| Sbjct 9797829 AGACCTGTGTTTTT-GTAAACAGTCGCTTGG 9797800 >seq6 Length=21794218 Score = 107 bits (118), Expect = 4e-21 Identities = 133/181 (73%), Gaps = 12/181 (7%) Strand=Plus/Minus Query 88 ACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACT 147 ||||| | ||||||||||||||||||||||||| |||| ||||| | | |||||||| Sbjct 952 ACTTATGCAACAAGGAATTTCGCTACCTTAGGACAGTTA--GTTACTGTCACCGTTTACC 895 Query 148 GGGGCTTAAGTTCACTGCTTCGATTGCTCTAACAGATCCCCTTA--ACCTTCCAGCACCG 205 ||||||| |||| |||| ||| || |||| ||||||| |||||| Sbjct 894 GGGGCTTCCATTCAAAGCTTACC--------ACACTTCTCCTTCTGACCTTCCGGCACCG 843 Query 206 GGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAGAAACCTGTGTTTTTGGTAA 265 ||||| ||| | |||| |||||| || | |||||||||| | ||||||||| ||| Sbjct 842 GGCAGTTGTCCGACTCTATTCATCGTGTTACCACTTAGCAGAGTCATGTGTTTTTAATAA 783 Query 266 A 266 | Sbjct 782 A 782 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1062373535616