Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20brachyantha_20[refseq_20GCF_5F000231095.1_202012-01-19] 2,491 sequences; 259,907,595 total letters Query= AAMG01000811.1 Length=502 Score E Sequences producing significant alignments: (Bits) Value seq1 419 7e-115 seq5 116 1e-23 seq2 96.9 1e-17 seq11 91.5 4e-16 seq7 78.8 3e-12 >seq1 Length=33916305 Score = 419 bits (464), Expect = 7e-115 Identities = 378/473 (80%), Gaps = 3/473 (1%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||| |||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 22038777 TACGTTCGCAAGAATGAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGTGGAGCAT 22038836 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120 |||||||||||||| |||| |||||||||||||||| |||||||| | || |||| Sbjct 22038837 GTGGTTTAATTCGATGCAAAGCGAAGAACCTTACCAGGGCTTGACATGCCGCGAATCCTC 22038896 Query 121 TAGAGATAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAG 180 | || | ||||| | |||| ||| || | ||||||| ||||||| ||||||||| Sbjct 22038897 TTGAAAGAGAGGGGTGCCCTC--GGGAACGCGGACACAGGTGGTGCATGGCTGTCGTCAG 22038954 Query 181 CTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGC 240 |||||| ||| || |||||||||||||| |||||||||||||||||| | |||||||| Sbjct 22038955 CTCGTGCCGTAAGGTGTTGGGTTAAGTCTCGCAACGAGCGCAACCCTCGTGTTTAGTTGC 22039014 Query 241 CATCATTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGAC 300 || || | ||| || || || | ||| ||||||| || ||||||||||| | ||| Sbjct 22039015 CACTATGA-GTTTGGAACCCTGAACAGACCGCCGGTGTTAAGCCGGAGGAAGGAGAGGAT 22039073 Query 301 GACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAATAC 360 || | ||| ||||||||||||||||| ||||| |||||||||||||||||| | || Sbjct 22039074 GAGGCCAAGTCATCATGCCCCTTATGCCCTGGGCGACACACGTGCTACAATGGGCGGGAC 22039133 Query 361 AAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTG 420 |||||| |||| ||||||| ||| || ||| ||| || |||||||||||||| Sbjct 22039134 AAAGGGTCGCGATCTCGCGAGGGTGAGCTAACTCCAAAAACCCGTCCTCAGTTCGGATTG 22039193 Query 421 TAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAGC 473 || |||||||||| || ||||||| ||||||||||||||||| | ||||| Sbjct 22039194 CAGGCTGCAACTCGCCTGCATGAAGCAGGAATCGCTAGTAATCGCCGGTCAGC 22039246 Score = 170 bits (188), Expect = 6e-40 Identities = 169/215 (79%), Gaps = 3/215 (1%) Strand=Plus/Minus Query 282 ACCGGAGGAAGGTGGGGACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACAC 341 || ||||||||||||||| |||||||| || |||| |||||||| ||||| |||||| Sbjct 9862612 ACTGGAGGAAGGTGGGGATGACGTCAAGTCCGCATGGCCCTTATGGGCTGGGCCACACAC 9862553 Query 342 GTGCTACAATGGACAAT-ACAAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAA 400 |||||||||||| |||| |||| ||| ||| | | | ||| ||| ||||| | || Sbjct 9862552 GTGCTACAATGG-CAATGACAATGGGAAGCAAGGCTGTAAGGCGGAGCGAATCCGAAAAG 9862494 Query 401 GTTGTTCTCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTA 460 ||| ||||||||||||||| | ||||||||| | |||||| || ||||||||||| Sbjct 9862493 ATTGC-CTCAGTTCGGATTGTTCTTTGCAACTCGGGAACATGAAGTTGAAATCGCTAGTA 9862435 Query 461 ATCGTAGATCAGCATGCTACGGTGAATACGTTCCC 495 |||| ||| ||||||| ||||||||| || ||| Sbjct 9862434 ATCGCGGATTAGCATGCCGCGGTGAATATGTACCC 9862400 Score = 80.6 bits (88), Expect = 8e-13 Identities = 66/79 (84%), Gaps = 1/79 (1%) Strand=Plus/Minus Query 15 TGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTTTAATTCGA 74 |||||||||||||||||||| | ||||||||||| ||||||||||||||||| || Sbjct 16782824 TGAAACTCAAAGGAATTGACAATG-CCCGCACAAGCACCAGAGCATGTGGTTTAATTTGA 16782766 Query 75 AGCAACGCGAAGAACCTTA 93 ||| || |||||||||| Sbjct 16782765 CACAAAGCAAAGAACCTTA 16782747 >seq5 Length=20131956 Score = 116 bits (128), Expect = 1e-23 Identities = 132/171 (77%), Gaps = 11/171 (6%) Strand=Plus/Plus Query 330 TGGGCTACACACGTGCTACAATGGACAATA--CAAAGG--GCAGCGAAACCGCGAGGTCA 385 ||||| |||||||||||||||||| |||| || ||| |||| | | | |||| Sbjct 2904840 TGGGCCACACACGTGCTACAATGG-CAATGATCATAGGAAGCAGGG----CTGTAAGTCA 2904894 Query 386 -AGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAA 444 ||| ||||| | |||| | ||||||||||||||| ||||||||| | | ||||| Sbjct 2904895 GAGCGAATCCGA-AAAGATTACCTCAGTTCGGATTGTTCTCTGCAACTTGGGAACATGAA 2904953 Query 445 GCTGGAATCGCTAGTAATCGTAGATCAGCATGCTACGGTGAATACGTTCCC 495 | || ||||||||||||||| ||||||||||| |||||||||| || ||| Sbjct 2904954 GTTGAAATCGCTAGTAATCGCGGATCAGCATGCCACGGTGAATATGTACCC 2905004 Score = 102 bits (112), Expect = 2e-19 Identities = 84/100 (84%), Gaps = 2/100 (2%) Strand=Plus/Plus Query 8 GCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTTT 67 ||||| ||||||||||||||||| || | |||| ||||||||||| |||||||||||| Sbjct 19241409 GCAAGAACGAAACTCAAAGGAATTGTCGAG-ACCCTCACAAGCGGTGAAGCATGTGGTTT 19241467 Query 68 AATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACAT 107 ||||||| |||| | ||| |||||||||| ||| |||| Sbjct 19241468 AATTCGATGCAAAGAGAA-AACCTTACCAGGGCTTTACAT 19241506 Score = 98.7 bits (108), Expect = 3e-18 Identities = 104/136 (76%), Gaps = 1/136 (1%) Strand=Plus/Minus Query 360 CAAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATT 419 ||||||| |||| || |||| ||| || ||| ||| || ||||||||||||| Sbjct 554490 CAAAGGGTCGCGATCTCGTGAGGGTGAGCTAACTCCAAAAACCCGTCCTCAGTTCGGATT 554431 Query 420 GTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAG-CATGCT 478 | || |||||||||| | |||||||| ||||||||||||||||| | |||| ||| Sbjct 554430 GCAGGCTGCAACTCGCATGTATGAAGCAGGAATCGCTAGTAATCGCTGGTCAGCCATATG 554371 Query 479 ACGGTGAATACGTTCC 494 |||||||| |||||| Sbjct 554370 GCGGTGAATCCGTTCC 554355 >seq2 Length=27082872 Score = 96.9 bits (106), Expect = 1e-17 Identities = 74/86 (86%), Gaps = 4/86 (5%) Strand=Plus/Plus Query 8 GCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTTT 67 ||||| | |||||||| |||||||||||| |||||||||||| |||||||||||||| Sbjct 3517335 GCAAGAATAAAACTCAA--GAATTGACGGGG--CCGCACAAGCGGAGGAGCATGTGGTTT 3517390 Query 68 AATTCGAAGCAACGCGAAGAACCTTA 93 ||||||| ||||||| | ||||||| Sbjct 3517391 AATTCGATACAACGCGGAAAACCTTA 3517416 >seq11 Length=16001410 Score = 91.5 bits (100), Expect = 4e-16 Identities = 59/65 (91%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 17 AAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTTTAATTCGAAG 76 ||||||||||||||||| |||| || ||||||||| |||||||||||||||||||||| Sbjct 2908013 AAACTCAAAGGAATTGATGGGGCCCTGCACAAGCGATGGAGCATGTGGTTTAATTCGATA 2908072 Query 77 CAACG 81 ||||| Sbjct 2908073 CAACG 2908077 >seq7 Length=18603524 Score = 78.8 bits (86), Expect = 3e-12 Identities = 87/115 (76%), Gaps = 2/115 (2%) Strand=Plus/Plus Query 83 GAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTCTAGAGATAGAGGTTTCCCCTTC 142 |||||||||||||| |||||||| | ||| ||||| || | ||||| | ||||| Sbjct 5881636 GAAGAACCTTACCAGGGCTTGACATGCCGTGAATCCTCTTGAAAGAGAGGGGTGCCCTT- 5881694 Query 143 GGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGT 197 ||| ||| | |||||| |||||| ||||||||||||||| ||| || ||| Sbjct 5881695 -GGGAACACGGACGCAGGTGGTGCATGCCTGTCGTCAGCTCGTGCCGTAAGGTGT 5881748 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1503962535360