Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Oryza_20brachyantha_20[refseq_20GCF_5F000231095.1_202012-01-19]
2,491 sequences; 259,907,595 total letters
Query= AAMG01000941.1
Length=299
Score E
Sequences producing significant alignments: (Bits) Value
seq182 325 7e-87
seq1 73.4 7e-11
>seq182
Length=15015
Score = 325 bits (360), Expect = 7e-87
Identities = 225/253 (89%), Gaps = 4/253 (2%)
Strand=Plus/Plus
Query 30 GTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCT 89
|||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2808 GTCATCAGAAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCT 2867
Query 90 ATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCG 149
||| |||||||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct 2868 ATTTGTGGGTGAACAATCCAACGCTTGGTGAATTCTGCTTCACAATGATAGGAAGAGCCG 2927
Query 150 ACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATC 209
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2928 ACATCGAAGGATCAAAAAGCGACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATC 2987
Query 210 CCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAAT--TTCGAGGGACTAAAGGATCGAT 267
|||||||||||||||||| ||||||| || | || ||| | | | ||||||||| |
Sbjct 2988 CCTGTGGTAACTTTTCTGACACCTCTTGCTGAAGATTCTTCAA--GCCAAAAGGATCGCT 3045
Query 268 AGGCCACACTTTC 280
|||| |||||
Sbjct 3046 GGGCCTGGCTTTC 3058
>seq1
Length=33916305
Score = 73.4 bits (80), Expect = 7e-11
Identities = 122/175 (70%), Gaps = 6/175 (3%)
Strand=Plus/Plus
Query 53 CTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACG 112
|||||||| |||| ||| |||||||||||||| || |||| |||| ||||| |||||
Sbjct 17529103 CTGTCTCACGACGTTCTGAACCCAGCTCACGTACCGCATTAATGGGCGAACAGCCCAACC 17529162
Query 113 CTT---ACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGC 169
||| ||| | | ||| | | | |||||||||||||||| | ||||
Sbjct 17529163 CTTGGAACCACCTACAGCTCC---AGGTGGCGAAGAGCCGACATCGAGGTGCCAAACCTT 17529219
Query 170 AACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTT 224
||||| | || || ||||| | |||| ||||||||| |||||||||
Sbjct 17529220 CCCGTCGATGTGGACTCTTGGGGAAGATCAGCCTGTTATCCCTAGAGTAACTTTT 17529274
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 854378716896
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |