Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20brachyantha_20[refseq_20GCF_5F000231095.1_202012-01-19] 2,491 sequences; 259,907,595 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq182 325 7e-87 seq1 73.4 7e-11 >seq182 Length=15015 Score = 325 bits (360), Expect = 7e-87 Identities = 225/253 (89%), Gaps = 4/253 (2%) Strand=Plus/Plus Query 30 GTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCT 89 |||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 2808 GTCATCAGAAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCT 2867 Query 90 ATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCG 149 ||| |||||||||||||||||||||| |||||||||||| |||||||||||||||| Sbjct 2868 ATTTGTGGGTGAACAATCCAACGCTTGGTGAATTCTGCTTCACAATGATAGGAAGAGCCG 2927 Query 150 ACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATC 209 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 2928 ACATCGAAGGATCAAAAAGCGACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATC 2987 Query 210 CCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAAT--TTCGAGGGACTAAAGGATCGAT 267 |||||||||||||||||| ||||||| || | || ||| | | | ||||||||| | Sbjct 2988 CCTGTGGTAACTTTTCTGACACCTCTTGCTGAAGATTCTTCAA--GCCAAAAGGATCGCT 3045 Query 268 AGGCCACACTTTC 280 |||| ||||| Sbjct 3046 GGGCCTGGCTTTC 3058 >seq1 Length=33916305 Score = 73.4 bits (80), Expect = 7e-11 Identities = 122/175 (70%), Gaps = 6/175 (3%) Strand=Plus/Plus Query 53 CTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACG 112 |||||||| |||| ||| |||||||||||||| || |||| |||| ||||| ||||| Sbjct 17529103 CTGTCTCACGACGTTCTGAACCCAGCTCACGTACCGCATTAATGGGCGAACAGCCCAACC 17529162 Query 113 CTT---ACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGC 169 ||| ||| | | ||| | | | |||||||||||||||| | |||| Sbjct 17529163 CTTGGAACCACCTACAGCTCC---AGGTGGCGAAGAGCCGACATCGAGGTGCCAAACCTT 17529219 Query 170 AACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTT 224 ||||| | || || ||||| | |||| ||||||||| ||||||||| Sbjct 17529220 CCCGTCGATGTGGACTCTTGGGGAAGATCAGCCTGTTATCCCTAGAGTAACTTTT 17529274 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854378716896